RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 OR1L3Q8NH93 324 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 ASB17Q8WXJ9 295 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 MARS2Q96GW9 593 aaKnown RBP11.52□□□□□ -0.57
PTPRN-202ENST00000409251 EMC6Q9BV81 110 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 CNTD2Q9H8S5 307 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 COA3Q9Y2R0 106 aaPredicted RBP11.52□□□□□ -0.57
PTPRN-202ENST00000409251 CARHSP1Q9Y2V2 147 aaKnown RBP11.52□□□□□ -0.57
PTPRN-202ENST00000409251 TECTAO75443 2155 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 PHF3Q92576 2039 aaKnown RBP11.52□□□□□ -0.57
PTPRN-202ENST00000409251 A0A087WZY1 265 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 EFSO43281 561 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 MMP7P09237 267 aaPredicted RBP11.52□□□□□ -0.57
PTPRN-202ENST00000409251 SMIM10L1P0DMW3 83 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 PRPS1P60891 318 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 UBE2KP61086 200 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 RPS4XP62701 263 aaKnown RBP11.52□□□□□ -0.57
PTPRN-202ENST00000409251 SLC25A24Q6NUK1 477 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 ZDHHC12Q96GR4 267 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 SMIM10Q96HG1 83 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 RARRES2Q99969 163 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 RNF126Q9BV68 326 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 DOK5Q9P104 306 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 DNAJB11Q9UBS4 358 aa11.52□□□□□ -0.57
PTPRN-202ENST00000409251 CFAP47Q6ZTR5 3102 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 FAM221AA4D161 298 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 FAM221BA6H8Z2 402 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 SNRPCP09234 159 aaKnown RBP11.51□□□□□ -0.57
PTPRN-202ENST00000409251 RAB38P57729 211 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 MESTQ5EB52 335 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 SLC18B1Q6NT16 456 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 MEX3BQ6ZN04 569 aaKnown RBP11.51□□□□□ -0.57
PTPRN-202ENST00000409251 RNF144BQ7Z419 303 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 TMEM217Q8N7C4 229 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 PHYHIPQ92561 330 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 MRI1Q9BV20 369 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 HHLA2Q9UM44 414 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 TSTD3H0UI37 97 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 CD8AP01732 235 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 TMEM33P57088 247 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 RSPO4Q2I0M5 234 aaPredicted RBP11.51□□□□□ -0.57
PTPRN-202ENST00000409251 CARD17Q5XLA6 110 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 LPCAT3Q6P1A2 487 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 DCXRQ7Z4W1 244 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 TGIF2LXQ8IUE1 241 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 ZFP62Q8NB50 900 aaPredicted RBP11.51□□□□□ -0.57
PTPRN-202ENST00000409251 NECAP1Q8NC96 275 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 C5orf34Q96MH7 638 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 WFIKKN1Q96NZ8 548 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 OR10A5Q9H207 317 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 ZDHHC8Q9ULC8 765 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 HSF4Q9ULV5 492 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 KPTNQ9Y664 436 aa11.51□□□□□ -0.57
PTPRN-202ENST00000409251 IGHV1OR21-1A0A087WYE8 117 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 UBE2CO00762 179 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 OR2T2Q6IF00 324 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 SPNS3Q6ZMD2 512 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 IL34Q6ZMJ4 242 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 SLC25A42Q86VD7 318 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 CDC6Q99741 560 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 SH3BGRL3Q9H299 93 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 CHST11Q9NPF2 352 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 MYO7BQ6PIF6 2116 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 GATCO43716 136 aaKnown RBP11.5□□□□□ -0.57
PTPRN-202ENST00000409251 TIAF1O95411 115 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 H2BFMP0C1H6 154 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 CD37P11049 281 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 MECP2P51608 486 aaKnown RBP11.5□□□□□ -0.57
PTPRN-202ENST00000409251 KIAA2026Q5HYC2 2103 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 LYSMD4Q5XG99 296 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 TCTN2Q96GX1 697 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 SNX22Q96L94 193 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 TSPAN32Q96QS1 320 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 OR6C1Q96RD1 312 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 NXF5Q9H1B4 397 aaKnown RBP11.5□□□□□ -0.57
PTPRN-202ENST00000409251 DUSP22Q9NRW4 184 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 TMEM14AQ9Y6G1 99 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 H0YIG0 161 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 SYT7O43581 403 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 RAMP1O60894 148 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 LYPD3O95274 346 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 ZNF20P17024 532 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 DVL1P1P54792 670 aaPredicted RBP11.5□□□□□ -0.57
PTPRN-202ENST00000409251 MST1LQ2TV78 715 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 ANKRD55Q3KP44 614 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 PHLDA2Q53GA4 152 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 NPSR1Q6W5P4 371 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 ABHD6Q9BV23 337 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 SERTAD3Q9UJW9 196 aa11.5□□□□□ -0.57
PTPRN-202ENST00000409251 SOCS1O15524 211 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 TRGC2P03986 189 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 SLC25A4P12235 298 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 PPP1CCP36873 323 aaKnown RBP11.49□□□□□ -0.57
PTPRN-202ENST00000409251 CYCSP99999 105 aaKnown RBP11.49□□□□□ -0.57
PTPRN-202ENST00000409251 SLC17A1Q14916 467 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 CD226Q15762 336 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 KCTD18Q6PI47 426 aaPredicted RBP11.49□□□□□ -0.57
PTPRN-202ENST00000409251 BRICD5Q6PL45 260 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 MED25Q71SY5 747 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 TMEM123Q8N131 208 aa11.49□□□□□ -0.57
PTPRN-202ENST00000409251 ASB5Q8WWX0 329 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms