RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 MS4A18H0YCH9 400 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 UBE2CO00762 179 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 NME2P1O60361 137 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 OR8U8P0C7N1 319 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 FOLR2P14207 255 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 TBPP20226 339 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 EIF2S3P41091 472 aaKnown RBP12.12□□□□□ -0.47
USP49-201ENST00000373006 MMP16P51512 607 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 MS4A18Q3C1V0 323 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 HLA-DQA1Q5Y7H0 255 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 EIF5AL1Q6IS14 154 aaKnown RBP12.12□□□□□ -0.47
USP49-201ENST00000373006 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.12□□□□□ -0.47
USP49-201ENST00000373006 POC1AQ8NBT0 407 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 CCDC54Q8NEL0 328 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 OR10D4PQ8NGN7 298 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 TOLLIPQ9H0E2 274 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 C7orf77A4D0Y5 90 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 FRG2CA6NGY1 282 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 FBP1P09467 338 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 HIST1H1DP16402 221 aaKnown RBP12.12□□□□□ -0.47
USP49-201ENST00000373006 ZNF20P17024 532 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 RPL12P30050 165 aaKnown RBP12.12□□□□□ -0.47
USP49-201ENST00000373006 AKT2P31751 481 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 TNFRSF4P43489 277 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 FHITP49789 147 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 SULT1A2P50226 295 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 SSTP61278 116 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 FOXK1P85037 733 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 AADACL3Q5VUY0 350 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 C16orf47Q6ZP98 133 aaPredicted RBP12.12□□□□□ -0.47
USP49-201ENST00000373006 DEFB119Q8N690 84 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 ZDHHC12Q96GR4 267 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 GPER1Q99527 375 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 SMOC1Q9H4F8 434 aa12.12□□□□□ -0.47
USP49-201ENST00000373006 WDFY3Q8IZQ1 3526 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 SCGB1D2O95969 90 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 LYL1P12980 280 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 FOXL2P58012 376 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 ZNF616Q08AN1 781 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 IAH1Q2TAA2 248 aaPredicted RBP12.11□□□□□ -0.47
USP49-201ENST00000373006 TMEM92Q6UXU6 159 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 C9orf40Q8IXQ3 194 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 ZNF561Q8N587 486 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 ARRDC1Q8N5I2 433 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 NPRL2Q8WTW4 380 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 RNF133Q8WVZ7 376 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 C11orf40Q8WZ69 217 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 FAM71F1Q96KD3 344 aaPredicted RBP12.11□□□□□ -0.47
USP49-201ENST00000373006 RAB33BQ9H082 229 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 EHFQ9NZC4 300 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 FBXL17Q9UF56 701 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 TIMM10BQ9Y5J6 103 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 K7EPK0 472 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 CDC14BO60729 498 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 OPN1LWP04000 364 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 HCKP08631 526 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 FCGR2CP31995 323 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 TMEM33P57088 247 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 CSNK2A1P68400 391 aaPredicted RBP12.11□□□□□ -0.47
USP49-201ENST00000373006 ABHD12BQ7Z5M8 362 aaPredicted RBP12.11□□□□□ -0.47
USP49-201ENST00000373006 FAM71E2Q8N5Q1 922 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 CSNK2A3Q8NEV1 391 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 OR10S1Q8NGN2 331 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 ZNF721Q8TF20 911 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 TMEM59Q9BXS4 323 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 EGLN1Q9GZT9 426 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 EIF5A2Q9GZV4 153 aaKnown RBP12.11□□□□□ -0.47
USP49-201ENST00000373006 LSM5Q9Y4Y9 91 aaKnown RBP12.11□□□□□ -0.47
USP49-201ENST00000373006 SLCO1B1Q9Y6L6 691 aa12.11□□□□□ -0.47
USP49-201ENST00000373006 TSPAN15O95858 294 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 DDAH2O95865 285 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 FOSL2P15408 326 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 ZNF708P17019 499 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 ACKR3P25106 362 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 KIAA0141Q14154 515 aaPredicted RBP12.1□□□□□ -0.47
USP49-201ENST00000373006 PYY3Q5JQD4 70 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 VAX1Q5SQQ9 334 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 MARS2Q96GW9 593 aaKnown RBP12.1□□□□□ -0.47
USP49-201ENST00000373006 DUSP15Q9H1R2 295 aaPredicted RBP12.1□□□□□ -0.47
USP49-201ENST00000373006 RGCCQ9H4X1 137 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 SPACA1Q9HBV2 294 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 LANCL2Q9NS86 450 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 VPS13AQ96RL7 3174 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 ZNF729A6NN14 1252 aaPredicted RBP12.1□□□□□ -0.47
USP49-201ENST00000373006 SHISA8B8ZZ34 492 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 ALG1L2C9J202 215 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 CST4P01036 141 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 MT-ND4LP03901 98 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 CHRM2P08172 466 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 POU2F2P09086 479 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 PET100P0DJ07 73 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 FPR2P25090 351 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 EFNA3P52797 238 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 SNU13P55769 128 aaKnown RBP12.1□□□□□ -0.47
USP49-201ENST00000373006 GFERP55789 205 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 VDAC3Q9Y277 283 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 IGHV5-51A0A0C4DH38 117 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 TMEM150CB9EJG8 249 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 C5orf67F2Z3F1 127 aa12.1□□□□□ -0.47
USP49-201ENST00000373006 H3BML4 177 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms