RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 GPER1Q99527 375 aa11.91□□□□□ -0.5
PTPRF-202ENST00000372405 NICN1Q9BSH3 213 aa11.91□□□□□ -0.5
PTPRF-202ENST00000372405 ZMAT3Q9HA38 289 aaKnown RBP11.91□□□□□ -0.5
PTPRF-202ENST00000372405 CHD8Q9HCK8 2581 aa11.91□□□□□ -0.5
PTPRF-202ENST00000372405 MT-ND4P03905 459 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 ALDH3B1P43353 468 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 PER3P56645 1201 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 ZP1P60852 638 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 CXADRP78310 365 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 DYRK1AQ13627 763 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 CLVS2Q5SYC1 327 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 C1orf185Q5T7R7 199 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 WDR31Q8NA23 367 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 SLC30A7Q8NEW0 376 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 FAM57AQ8TBR7 257 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 C15orf40Q8WUR7 153 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 BOD1Q96IK1 185 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 LPAR5Q9H1C0 372 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 A0A0A6YYH2 397 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 ANKRD20A5PA0PJZ0 165 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 A6NJ64 397 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 FIGNL2A6NMB9 653 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 H7C417 338 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 CDC14BO60729 498 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 NRASP01111 189 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 APLNRP35414 380 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 PRR30Q53SZ7 412 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-202ENST00000372405 PLET1Q6UQ28 207 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 RFPL4BQ6ZWI9 263 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 OR2W3Q7Z3T1 314 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 CXorf67Q86X51 503 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-202ENST00000372405 OR56B2PQ8NGI1 322 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 PHF21AQ96BD5 680 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 SPSB1Q96BD6 273 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 PPP1R14BQ96C90 147 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 BANF2Q9H503 90 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 PTTG3PQ9NZH4 202 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 MTFP1Q9UDX5 166 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 PROCRQ9UNN8 238 aa11.9□□□□□ -0.5
PTPRF-202ENST00000372405 ZNF816-ZNF321PA0A0X1KG74 233 aa11.89□□□□□ -0.51
PTPRF-202ENST00000372405 MEIS3P1A6NDR6 274 aa11.89□□□□□ -0.51
PTPRF-202ENST00000372405 PTGER4P35408 488 aa11.89□□□□□ -0.51
PTPRF-202ENST00000372405 UCNP55089 124 aa11.89□□□□□ -0.51
PTPRF-202ENST00000372405 UBE2NP61088 152 aaKnown RBP11.89□□□□□ -0.51
PTPRF-202ENST00000372405 SLC22A6Q4U2R8 563 aa11.89□□□□□ -0.51
PTPRF-202ENST00000372405 GPX8Q8TED1 209 aa11.89□□□□□ -0.51
PTPRF-202ENST00000372405 TNFAIP8L1Q8WVP5 186 aa11.89□□□□□ -0.51
PTPRF-202ENST00000372405 SEH1LQ96EE3 360 aa11.89□□□□□ -0.51
PTPRF-202ENST00000372405 SLX1AQ9BQ83 275 aa11.89□□□□□ -0.51
PTPRF-202ENST00000372405 MARVELD1Q9BSK0 173 aa11.89□□□□□ -0.51
PTPRF-202ENST00000372405 HRASLSQ9HDD0 168 aa11.89□□□□□ -0.51
PTPRF-202ENST00000372405 FAM230AA0A1W2PPH8 454 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 METTL21EPA6NDL7 271 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 TMEM235A6NFC5 223 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 MPIG6BO95866 241 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 GIFP27352 417 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 PRSS3P35030 304 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 TIMP3P35625 211 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 VEGFCP49767 419 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 IDH3GP51553 393 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-202ENST00000372405 CCR6P51684 374 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 MTCP1P56278 107 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 SNTB2Q13425 540 aaKnown RBP11.88□□□□□ -0.51
PTPRF-202ENST00000372405 SF3B4Q15427 424 aaKnown RBP eCLIP11.88□□□□□ -0.513e-10■■■■■ 45.2
PTPRF-202ENST00000372405 ZNF260Q3ZCT1 412 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 ZNF554Q86TJ5 538 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 CCDC36Q8IYA8 594 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 PNLDC1Q8NA58 520 aaKnown RBP11.88□□□□□ -0.51
PTPRF-202ENST00000372405 C1orf162Q8NEQ5 155 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-202ENST00000372405 OR10K1Q8NGX5 313 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 KCNG3Q8TAE7 436 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 AQP3Q92482 292 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 WBP1Q96G27 269 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 OR51B6Q9H340 312 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 GPR160Q9UJ42 338 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 BOLA2-SMG1P6H3BVE0 249 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 CRHP06850 196 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 UBBP0CG47 229 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 CNN3Q15417 329 aaKnown RBP11.88□□□□□ -0.51
PTPRF-202ENST00000372405 ZBTB37Q5TC79 503 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 AGAP6Q5VW22 663 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 RAB12Q6IQ22 244 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 FAAP20Q6NZ36 180 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 PIGCQ92535 297 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 SNRNP40Q96DI7 357 aaKnown RBP11.88□□□□□ -0.51
PTPRF-202ENST00000372405 C7orf50Q9BRJ6 194 aaKnown RBP11.88□□□□□ -0.51
PTPRF-202ENST00000372405 TMEM59Q9BXS4 323 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 FGF23Q9GZV9 251 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-202ENST00000372405 ZNF629Q9UEG4 869 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-202ENST00000372405 KCNN3Q9UGI6 736 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 ING4Q9UNL4 249 aa11.88□□□□□ -0.51
PTPRF-202ENST00000372405 ZNF850A8MQ14 1090 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 SOCS1O15524 211 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 CRTAPO75718 401 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-202ENST00000372405 RBBP9O75884 186 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 AGFG2O95081 481 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 ECDO95905 644 aaPredicted RBP11.87□□□□□ -0.51
PTPRF-202ENST00000372405 IL2RAP01589 272 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 FCER2P06734 321 aa11.87□□□□□ -0.51
PTPRF-202ENST00000372405 HOXB1P14653 301 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms