RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 SHEQ5VZ18 495 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 SYT13Q7L8C5 426 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 D2HGDHQ8N465 521 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 NOXO1Q8NFA2 376 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 OR56B1Q8NGI3 324 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 RHOFQ9HBH0 211 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 FSCN3Q9NQT6 498 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 CYTL1Q9NRR1 136 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 DOCK7Q96N67 2140 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 MASP2O00187 686 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 ZNHIT1O43257 154 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 TMEM225BP0DP42 221 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 MUC1P15941 1255 aaPredicted RBP10.69□□□□□ -0.7
CLIP3-201ENST00000360535 SLC25A45Q8N413 288 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 LILRB1Q8NHL6 650 aaPredicted RBP10.69□□□□□ -0.7
CLIP3-201ENST00000360535 DYRK2Q92630 601 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 RTBDNQ9BSG5 229 aaPredicted RBP10.69□□□□□ -0.7
CLIP3-201ENST00000360535 C20orf24Q9BUV8 137 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 UQCC1Q9NVA1 299 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 IGKV1D-8A0A087WSZ0 117 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 CCDC85CA6NKD9 419 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 ADAM10O14672 748 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 CELA2AP08217 269 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 PNLIPP16233 465 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 RBMXP38159 391 aaKnown RBP10.69□□□□□ -0.7
CLIP3-201ENST00000360535 FLI1Q01543 452 aaPredicted RBP10.69□□□□□ -0.7
CLIP3-201ENST00000360535 PCK2Q16822 640 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 OR10Z1Q8NGY1 313 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 POC1BQ8TC44 478 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 CRB3Q9BUF7 120 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 TAF9BQ9HBM6 251 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 PLEKHJ1Q9NW61 149 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF581Q9P0T4 197 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF107Q9UII5 783 aaPredicted RBP10.69□□□□□ -0.7
CLIP3-201ENST00000360535 TRIOBPQ9H2D6 2365 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 FAM230AA0A1W2PPH8 454 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 SLC33A1O00400 549 aaPredicted RBP10.68□□□□□ -0.7
CLIP3-201ENST00000360535 PGA4P0DJD7 388 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 PGA3P0DJD8 388 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF17P17021 662 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 ACY1Q03154 408 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 ZP4Q12836 540 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 TSPO2Q5TGU0 170 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 C5orf46Q6UWT4 87 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 OR2AE1Q8NHA4 323 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 C12orf57Q99622 126 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF2Q9BSG1 426 aaPredicted RBP10.68□□□□□ -0.7
CLIP3-201ENST00000360535 NMES1Q9C002 83 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 C14orf166Q9Y224 244 aaKnown RBP10.68□□□□□ -0.7
CLIP3-201ENST00000360535 RAB19A4D1S5 217 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 MBTPS2O43462 519 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 SCRG1O75711 98 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 FOSL2P15408 326 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 HLA-GP17693 338 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 LPAR6P43657 344 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 PPT1P50897 306 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 DTX1Q86Y01 620 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 OIT3Q8WWZ8 545 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 GPR173Q9NS66 373 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 PIGLQ9Y2B2 252 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 FRYQ5TBA9 3013 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 SPRY1O43609 319 aaPredicted RBP10.68□□□□□ -0.7
CLIP3-201ENST00000360535 HPNP05981 417 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 GSTP1P09211 210 aaKnown RBP10.68□□□□□ -0.7
CLIP3-201ENST00000360535 SPP1P10451 314 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 PTGFRP43088 359 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 ASCL1P50553 236 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 P2RY4P51582 365 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 SRSF4Q08170 494 aaKnown RBP10.68□□□□□ -0.7
CLIP3-201ENST00000360535 RAB30Q15771 203 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 TAF9Q16594 264 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 PLPPR5Q32ZL2 321 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 IGSF11Q5DX21 431 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 FAM76BQ5HYJ3 339 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.68□□□□□ -0.7
CLIP3-201ENST00000360535 MISPQ8IVT2 679 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 GNRHR2Q96P88 292 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 USB1Q9BQ65 265 aaKnown RBP10.68□□□□□ -0.7
CLIP3-201ENST00000360535 MRPL13Q9BYD1 178 aaKnown RBP10.68□□□□□ -0.7
CLIP3-201ENST00000360535 DEFB126Q9BYW3 111 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 SRPK3Q9UPE1 567 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF175Q9Y473 711 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 DMDP11532 3685 aa10.68□□□□□ -0.7
CLIP3-201ENST00000360535 DBX1A6NMT0 343 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 XRCC2O43543 280 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 TRAF3IP2O43734 574 aaPredicted RBP10.67□□□□□ -0.7
CLIP3-201ENST00000360535 DIRAS3O95661 229 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 CRYBA1P05813 215 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 PATE4P0C8F1 98 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 NXPH1P58417 271 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF616Q08AN1 781 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 TGIF1Q15583 401 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 FAHD2BQ6P2I3 314 aaPredicted RBP10.67□□□□□ -0.7
CLIP3-201ENST00000360535 PRSS54Q6PEW0 395 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 PEG10Q86TG7 708 aaKnown RBP10.67□□□□□ -0.7
CLIP3-201ENST00000360535 FBXO17Q96EF6 278 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 FAHD2AQ96GK7 314 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 AKR1E2Q96JD6 320 aa10.67□□□□□ -0.7
CLIP3-201ENST00000360535 C1orf147Q96MC9 270 aaPredicted RBP10.67□□□□□ -0.7
CLIP3-201ENST00000360535 UCK1Q9HA47 277 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms