RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SIGLEC14Q08ET2 396 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 SNAI3Q3KNW1 292 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 ACER2Q5QJU3 275 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 ZNF660Q6AZW8 331 aaPredicted RBP18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 FBXW5Q969U6 566 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 PHB2Q99623 299 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 PDCD10Q9BUL8 212 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 RYDENQ9NUL5 291 aaKnown RBP18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 PCDHGA1Q9Y5H4 931 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 CNTRLQ7Z7A1 2325 aa18.24■□□□□ 0.51
CCDC88B-203ENST00000359902 CCDC187A0A096LP49 1063 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 FOXI3A8MTJ6 420 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 FCGR2AP12318 317 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 AVPR2P30518 371 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 SSPNQ14714 243 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 RGS7BPQ6MZT1 257 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 COQ8AQ8NI60 647 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 RHBDD1Q8TEB9 315 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 SGK3Q96BR1 496 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 NCKAP5O14513 1909 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 ZDBF2Q9HCK1 2354 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 ZNF716A6NP11 495 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 MTRF1O75570 445 aaKnown RBP18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 MGMTP16455 207 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 CRYGSP22914 178 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 VAMP1P23763 118 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 DBX2Q6ZNG2 339 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 ESX1Q8N693 406 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 OR10K1Q8NGX5 313 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 CRLF2Q9HC73 371 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 DEPPQ9NTK1 212 aa18.23■□□□□ 0.51
CCDC88B-203ENST00000359902 DUS4LO95620 317 aaKnown RBP18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 SLC25A4P12235 298 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 STARP49675 285 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 ARFRP1Q13795 201 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 ACTBL2Q562R1 376 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 C11orf87Q6NUJ2 197 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 SLC16A14Q7RTX9 510 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 SLC51BQ86UW2 128 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 ARRDC1Q8N5I2 433 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 CASTOR1Q8WTX7 329 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 ROBO4Q8WZ75 1007 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 HAS2Q92819 552 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 RBPMSQ93062 196 aaKnown RBP18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 C10orf35Q96D05 121 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 REG4Q9BYZ8 158 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 CXCL13O43927 109 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 GPR137CQ8N3F9 429 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 CCDC54Q8NEL0 328 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 PPP1R1CQ8WVI7 109 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 COMMD9Q9P000 198 aa18.22■□□□□ 0.51
CCDC88B-203ENST00000359902 hCG_1807616A0A1W2PRN6 198 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 SGCEO43556 437 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 SYNGR3O43761 229 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 CBX5P45973 191 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 RAB35Q15286 201 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 WIPI1Q5MNZ9 446 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 OR52H1Q8NGJ2 320 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 PIGTQ969N2 578 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 ADGRG7Q96K78 797 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 CXorf58Q96LI9 332 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 TMEM38BQ9NVV0 291 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 TNFSF18Q9UNG2 199 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 GPR132Q9UNW8 380 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 PCSK5Q92824 1860 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 A0A0D9SG52 128 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 POM121CA8CG34 1229 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 CEACAM18A8MTB9 384 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 B8ZZF3 427 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 TRAPPC6AO75865 159 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 SERPINA7P05543 415 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 CST2P09228 141 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 SERPINA2P20848 420 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 BLVRBP30043 206 aaPredicted RBP18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 CLDN15P56746 228 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 LRRC37A5PQ49AS3 106 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 KCTD9Q7L273 389 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 TMEM105Q8N8V8 129 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 MED9Q9NWA0 146 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 P4HTMQ9NXG6 502 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 PRELID1Q9Y255 219 aa18.21■□□□□ 0.51
CCDC88B-203ENST00000359902 MYO7BQ6PIF6 2116 aa18.21■□□□□ 0.5
CCDC88B-203ENST00000359902 FAM25EA8MYX2 175 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 SPDEFO95238 335 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 ATP1B3P54709 279 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 ZNF774Q6NX45 483 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 DRAM2Q6UX65 266 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 AAED1Q7RTV5 226 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 SLC38A6Q8IZM9 456 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 OR10D3Q8NH80 312 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 LRRC20Q8TCA0 184 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 CPT1CQ8TCG5 803 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 PSMF1Q92530 271 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 ST6GALNAC5Q9BVH7 336 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 TM2D1Q9BX74 207 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 PECRQ9BY49 303 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 TECTAO75443 2155 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 DBX1A6NMT0 343 aa18.2■□□□□ 0.5
CCDC88B-203ENST00000359902 NPY4RP50391 375 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms