RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ZNF773Q6PK81 442 aa18.76■□□□□ 0.59
SHMT1-203ENST00000354098 CCDC54Q8NEL0 328 aa18.76■□□□□ 0.59
SHMT1-203ENST00000354098 HPSE2Q8WWQ2 592 aa18.76■□□□□ 0.59
SHMT1-203ENST00000354098 OR5P3Q8WZ94 311 aa18.76■□□□□ 0.59
SHMT1-203ENST00000354098 GPR173Q9NS66 373 aa18.76■□□□□ 0.59
SHMT1-203ENST00000354098 ZNF281Q9Y2X9 895 aa18.76■□□□□ 0.59
SHMT1-203ENST00000354098 IGHV1-69-2A0A0G2JMI3 117 aa18.75■□□□□ 0.59
SHMT1-203ENST00000354098 NRASP01111 189 aa18.75■□□□□ 0.59
SHMT1-203ENST00000354098 CD200P41217 278 aa18.75■□□□□ 0.59
SHMT1-203ENST00000354098 CRYBB2P43320 205 aa18.75■□□□□ 0.59
SHMT1-203ENST00000354098 SRP9P49458 86 aaKnown RBP18.75■□□□□ 0.59
SHMT1-203ENST00000354098 TESK1Q15569 626 aa18.75■□□□□ 0.59
SHMT1-203ENST00000354098 CLVS2Q5SYC1 327 aa18.75■□□□□ 0.59
SHMT1-203ENST00000354098 PRAMEF6Q5VXH4 476 aa18.75■□□□□ 0.59
SHMT1-203ENST00000354098 MOB3CQ70IA8 216 aa18.75■□□□□ 0.59
SHMT1-203ENST00000354098 WDR86Q86TI4 376 aa18.75■□□□□ 0.59
SHMT1-203ENST00000354098 ZDHHC23Q8IYP9 409 aa18.75■□□□□ 0.59
SHMT1-203ENST00000354098 RDH5Q92781 318 aa18.75■□□□□ 0.59
SHMT1-203ENST00000354098 NOP16Q9Y3C1 178 aaKnown RBP18.75■□□□□ 0.59
SHMT1-203ENST00000354098 PRRC2AP48634 2157 aaKnown RBP18.75■□□□□ 0.59
SHMT1-203ENST00000354098 MAP1AP78559 2803 aaPredicted RBP18.74■□□□□ 0.59
SHMT1-203ENST00000354098 TNFAIP8O95379 198 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 THBS2P35442 1172 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 SOX2P48431 317 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 RPS11P62280 158 aaKnown RBP eCLIP18.74■□□□□ 0.59
SHMT1-203ENST00000354098 MPPED2Q15777 294 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 CLEC12BQ2HXU8 276 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 DNM1P46Q6ZS02 220 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 SVOPQ8N4V2 548 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 SPERTQ8NA61 448 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 WFDC11Q8NEX6 87 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 TSEN15Q8WW01 171 aaKnown RBP18.74■□□□□ 0.59
SHMT1-203ENST00000354098 OPALINQ96PE5 141 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 MGLLQ99685 303 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 GCM1Q9NP62 436 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 DCAF16Q9NXF7 216 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 AKAP9Q99996 3911 aa18.74■□□□□ 0.59
SHMT1-203ENST00000354098 CHD3Q12873 2000 aaKnown RBP18.73■□□□□ 0.59
SHMT1-203ENST00000354098 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.73■□□□□ 0.59
SHMT1-203ENST00000354098 ANKRD61A6NGH8 418 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 ANXA2P2A6NMY6 339 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 GRPP07492 148 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 TNFRSF1AP19438 455 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 LIPKQ5VXJ0 399 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 PLCXD3Q63HM9 321 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 PRSS57Q6UWY2 283 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 ZNF420Q8TAQ5 688 aaPredicted RBP18.73■□□□□ 0.59
SHMT1-203ENST00000354098 GPR148Q8TDV2 347 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 CCL17Q92583 94 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 UFSP2Q9NUQ7 469 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 DHDHQ9UQ10 334 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 RP2O75695 350 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 UBE2V2Q15819 145 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 CEACAM21Q3KPI0 293 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 SHEQ5VZ18 495 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 ZNF367Q7RTV3 350 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 MOGAT3Q86VF5 341 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 CELF2-AS1Q8N7Q2 184 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 C10orf35Q96D05 121 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 RNF170Q96K19 258 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 HIST1H2AAQ96QV6 131 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 MICU1Q9BPX6 476 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 CHST5Q9GZS9 411 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 ISYNA1Q9NPH2 558 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 PPP1R3CQ9UQK1 317 aa18.73■□□□□ 0.59
SHMT1-203ENST00000354098 MYO9AB2RTY4 2548 aa18.72■□□□□ 0.59
SHMT1-203ENST00000354098 OTOGQ6ZRI0 2925 aa18.72■□□□□ 0.59
SHMT1-203ENST00000354098 PTBP3O95758 552 aaKnown RBP18.72■□□□□ 0.59
SHMT1-203ENST00000354098 CD1AP06126 327 aa18.72■□□□□ 0.59
SHMT1-203ENST00000354098 RPSAP08865 295 aaKnown RBP18.72■□□□□ 0.59
SHMT1-203ENST00000354098 OCM2P0CE71 109 aa18.72■□□□□ 0.59
SHMT1-203ENST00000354098 ZNF20P17024 532 aa18.72■□□□□ 0.59
SHMT1-203ENST00000354098 PMELP40967 661 aa18.72■□□□□ 0.59
SHMT1-203ENST00000354098 GPM6AP51674 278 aa18.72■□□□□ 0.59
SHMT1-203ENST00000354098 MRPS11P82912 194 aaKnown RBP18.72■□□□□ 0.59
SHMT1-203ENST00000354098 MLLT11Q13015 90 aaPredicted RBP18.72■□□□□ 0.59
SHMT1-203ENST00000354098 YIF1BQ5BJH7 314 aa18.72■□□□□ 0.59
SHMT1-203ENST00000354098 CLEC2AQ6UVW9 174 aa18.72■□□□□ 0.59
SHMT1-203ENST00000354098 RTL8AQ9BWD3 113 aa18.72■□□□□ 0.59
SHMT1-203ENST00000354098 C14orf119Q9NWQ9 140 aa18.72■□□□□ 0.59
SHMT1-203ENST00000354098 GATA4P43694 442 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 PDLIM4P50479 330 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 TPBGQ13641 420 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 HFEQ30201 348 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 UBE2UQ5VVX9 321 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 KCTD8Q6ZWB6 473 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 TSPAN14Q8NG11 270 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 NPRL2Q8WTW4 380 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 FAM168AQ92567 244 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 UFD1Q92890 307 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 ORAI1Q96D31 301 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 Q96MF0 132 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 TMED9Q9BVK6 235 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 ZNF696Q9H7X3 374 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 ABCB9Q9NP78 766 aa18.71■□□□□ 0.59
SHMT1-203ENST00000354098 MYOZ1Q9NP98 299 aaPredicted RBP18.71■□□□□ 0.59
SHMT1-203ENST00000354098 IGHV4-30-2A0A087WSY4 118 aa18.7■□□□□ 0.58
SHMT1-203ENST00000354098 TRBV5-5A0A0J9YX44 114 aa18.7■□□□□ 0.58
SHMT1-203ENST00000354098 ZNF732B4DXR9 585 aa18.7■□□□□ 0.58
SHMT1-203ENST00000354098 ZNF154Q13106 437 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms