RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 MMP16P51512 607 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 CD300CQ08708 224 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 ECH1Q13011 328 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 PDCD1Q15116 288 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 HSD17B12Q53GQ0 312 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 OR10K2Q6IF99 312 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 FOXL2NBQ6ZUU3 175 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 OR10K1Q8NGX5 313 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 RNF166Q96A37 237 aaPredicted RBP7.92□□□□□ -1.14
USP4-202ENST00000351842 C6orf62Q9GZU0 229 aaPredicted RBP7.92□□□□□ -1.14
USP4-202ENST00000351842 DYNLRB1Q9NP97 96 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 NGBQ9NPG2 151 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 DAPK2Q9UIK4 370 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 ABCA2Q9BZC7 2435 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 ITPR3Q14573 2671 aa7.92□□□□□ -1.14
USP4-202ENST00000351842 TMEM212A6NML5 194 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 CPEP16870 476 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 GSK3AP49840 483 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 GPM6AP51674 278 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 PSG7Q13046 419 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 TMEM91Q6ZNR0 172 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 KCTD20Q7Z5Y7 419 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 ELMOD2Q8IZ81 293 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 C1orf162Q8NEQ5 155 aaPredicted RBP7.91□□□□□ -1.14
USP4-202ENST00000351842 MNTQ99583 582 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 LIME1Q9H400 295 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 NARFLQ9H6Q4 476 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 SETD2Q9BYW2 2564 aaPredicted RBP7.91□□□□□ -1.14
USP4-202ENST00000351842 ARHGAP32A7KAX9 2087 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 ANXA2P2A6NMY6 339 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 CD300LBA8K4G0 201 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 F5H5P2 479 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 RGS9O75916 674 aaPredicted RBP7.91□□□□□ -1.14
USP4-202ENST00000351842 PAHP00439 452 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 TAS2R43P59537 309 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 PPP3R1P63098 170 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 ZNF181Q2M3W8 571 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 IDNKQ5T6J7 187 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 ZNF704Q6ZNC4 412 aaPredicted RBP7.91□□□□□ -1.14
USP4-202ENST00000351842 SLC38A6Q8IZM9 456 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 SEMA6DQ8NFY4 1073 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 OR52H1Q8NGJ2 320 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 AKAP1Q92667 903 aaKnown RBP eCLIP7.91□□□□□ -1.14
USP4-202ENST00000351842 DCSTAMPQ9H295 470 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 JKAMPQ9P055 326 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 NUFIP1Q9UHK0 495 aaKnown RBP7.91□□□□□ -1.14
USP4-202ENST00000351842 STUB1Q9UNE7 303 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 ZNF879B4DU55 563 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 LYNX1G3V0Z9 82 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 SPRY1O43609 319 aaPredicted RBP7.91□□□□□ -1.14
USP4-202ENST00000351842 LYNX1P0DP58 116 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 GABRA5P31644 462 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 CDKN1AP38936 164 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 RAD52P43351 418 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 FAM3AP98173 230 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 TFF3Q07654 80 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 P2RY14Q15391 338 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 KCNJ8Q15842 424 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 Q499Y3 187 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 ZNF826PQ6ZT77 177 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 CADM3Q8N126 398 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 ZNF488Q96MN9 340 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 DERL3Q96Q80 235 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 COQ7Q99807 217 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 MRPL37Q9BZE1 423 aaKnown RBP7.91□□□□□ -1.14
USP4-202ENST00000351842 NDUFB11Q9NX14 153 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 TAAR3PQ9P1P4 343 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 CKLFQ9UBR5 152 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 GSTK1Q9Y2Q3 226 aa7.91□□□□□ -1.14
USP4-202ENST00000351842 CHD3Q12873 2000 aaKnown RBP7.91□□□□□ -1.14
USP4-202ENST00000351842 HCFC1P51610 2035 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 A0A1W2PPR1 153 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 PIN1P1O15428 100 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 PLPP2O43688 288 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 UPK1BO75841 260 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 CLDN1O95832 211 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 MYL9P24844 172 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 PTAFRP25105 342 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 DUSP1P28562 367 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 CRYBB2P43320 205 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 RPS11P62280 158 aaKnown RBP eCLIP7.9□□□□□ -1.14
USP4-202ENST00000351842 SCN1BQ07699 218 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 TPBGQ13641 420 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 TRIM16LQ309B1 348 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 ZNF718Q3SXZ3 478 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 RNASE12Q5GAN4 147 aaKnown RBP7.9□□□□□ -1.14
USP4-202ENST00000351842 TMEM244Q5VVB8 128 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 SP5Q6BEB4 398 aaPredicted RBP7.9□□□□□ -1.14
USP4-202ENST00000351842 C17orf78Q8N4C9 275 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 DEFB108BQ8NET1 73 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 SYNPRQ8TBG9 265 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 SEH1LQ96EE3 360 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 KCTD7Q96MP8 289 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 ZNF75AQ96N20 296 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 PLK3Q9H4B4 646 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 RNF115Q9Y4L5 304 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 SPEF1Q9Y4P9 236 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 ABCA1O95477 2261 aa7.9□□□□□ -1.14
USP4-202ENST00000351842 FLNAP21333 2647 aaKnown RBP7.9□□□□□ -1.14
USP4-202ENST00000351842 HSPB6O14558 160 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms