RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 CD300CQ08708 224 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 HLXQ14774 488 aaPredicted RBP11.58□□□□□ -0.56
HMGB1-202ENST00000339872 C1orf185Q5T7R7 199 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 AGAP6Q5VW22 663 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 TMEM42Q69YG0 159 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 C3P1Q6ZMU1 363 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 RPRMLQ8N4K4 120 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 Q8NA96 180 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 PIGCQ92535 297 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 ZNF75AQ96N20 296 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 S100A13Q99584 98 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 NICN1Q9BSH3 213 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 TMEM59Q9BXS4 323 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 OPN3Q9H1Y3 402 aaPredicted RBP11.58□□□□□ -0.56
HMGB1-202ENST00000339872 OR51B6Q9H340 312 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 HRASLSQ9HDD0 168 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 PLSCR4Q9NRQ2 329 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 MTFP1Q9UDX5 166 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 KCNN3Q9UGI6 736 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 ING4Q9UNL4 249 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 STARD10Q9Y365 291 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 A0A0B4J293 547 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 RAB27BO00194 218 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 TOXO94900 526 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 CELA3BP08861 270 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 PRKACBP22694 351 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 HOXC12P31275 282 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 WNT5AP41221 380 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 CCR6P51684 374 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 CXADRP78310 365 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 PCGF3Q3KNV8 242 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 PLCXD3Q63HM9 321 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 C1QL2Q7Z5L3 287 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 MYPOPQ86VE0 399 aaPredicted RBP11.58□□□□□ -0.56
HMGB1-202ENST00000339872 CISD2Q8N5K1 135 aaKnown RBP11.58□□□□□ -0.56
HMGB1-202ENST00000339872 CHST4Q8NCG5 386 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 OR56B2PQ8NGI1 322 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 UBASH3BQ8TF42 649 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 HPS1Q92902 700 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 STARD4Q96DR4 205 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 BORCS8Q96FH0 119 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 MARVELD1Q9BSK0 173 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 REPIN1Q9BWE0 567 aaKnown RBP11.58□□□□□ -0.56
HMGB1-202ENST00000339872 LPAR5Q9H1C0 372 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 NEK6Q9HC98 313 aa11.58□□□□□ -0.56
HMGB1-202ENST00000339872 ELF5Q9UKW6 265 aaPredicted RBP11.58□□□□□ -0.56
HMGB1-202ENST00000339872 ATMQ13315 3056 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 TMEM235A6NFC5 223 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 SCGNO76038 276 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 FCER2P06734 321 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 FAM87AP0C7U9 286 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 PTGER4P35408 488 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 IDH3GP51553 393 aaPredicted RBP11.57□□□□□ -0.56
HMGB1-202ENST00000339872 UCNP55089 124 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 RAB25P57735 213 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 TBC1D28Q2M2D7 210 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 ZNF324BQ6AW86 544 aaPredicted RBP11.57□□□□□ -0.56
HMGB1-202ENST00000339872 MOB3CQ70IA8 216 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 CCDC36Q8IYA8 594 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 GABRG1Q8N1C3 465 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 ZNF610Q8N9Z0 462 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 NAXEQ8NCW5 288 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 OR10K1Q8NGX5 313 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 FAM57AQ8TBR7 257 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 CREB3L1Q96BA8 519 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 CPNE2Q96FN4 548 aaPredicted RBP11.57□□□□□ -0.56
HMGB1-202ENST00000339872 CACNG6Q9BXT2 260 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 CST11Q9H112 138 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 POFUT1Q9H488 388 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 ELL3Q9HB65 397 aaPredicted RBP11.57□□□□□ -0.56
HMGB1-202ENST00000339872 NUDT15Q9NV35 164 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 WIPF3A6NGB9 483 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 PLATP00750 562 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 IL2RAP01589 272 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 LPLP06858 475 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 NAT2P11245 290 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 ZNF14P17017 642 aaPredicted RBP11.57□□□□□ -0.56
HMGB1-202ENST00000339872 SERPINA2P20848 420 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 ALDH3B1P43353 468 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 RBP2P50120 134 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 TATDN3Q17R31 274 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 TMEM255AQ5JRV8 349 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 ZBTB37Q5TC79 503 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 FAAP20Q6NZ36 180 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 Q6ZTK2 550 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 LHFPL2Q6ZUX7 228 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 RFPL4BQ6ZWI9 263 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 GPX8Q8TED1 209 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 SEH1LQ96EE3 360 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 MCUBQ9NWR8 336 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 GHRLQ9UBU3 117 aa11.57□□□□□ -0.56
HMGB1-202ENST00000339872 IGKV1-27A0A075B6S5 117 aa11.56□□□□□ -0.56
HMGB1-202ENST00000339872 TRAV6A0A075B6T7 132 aa11.56□□□□□ -0.56
HMGB1-202ENST00000339872 A0A0A6YYD4 124 aa11.56□□□□□ -0.56
HMGB1-202ENST00000339872 INMT-MINDY4F8WBC2 141 aa11.56□□□□□ -0.56
HMGB1-202ENST00000339872 CGAP01215 116 aa11.56□□□□□ -0.56
HMGB1-202ENST00000339872 TCRBP04435 133 aa11.56□□□□□ -0.56
HMGB1-202ENST00000339872 CSF1P09603 554 aa11.56□□□□□ -0.56
HMGB1-202ENST00000339872 TMEM225BP0DP42 221 aa11.56□□□□□ -0.56
HMGB1-202ENST00000339872 AKAP14Q86UN6 197 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms