RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 HERPUD1Q15011 391 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 EBPQ15125 230 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CEBPEQ15744 281 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CLEC2AQ6UVW9 174 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 GALNTL5Q7Z4T8 443 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 RTN4RL2Q86UN3 420 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 SLC25A45Q8N413 288 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 EXD3Q8N9H8 876 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 NPEPL1Q8NDH3 523 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 TMEM104Q8NE00 496 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 IFI44Q8TCB0 444 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 HAS2Q92819 552 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 TMEM159Q96B96 161 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 YPEL2Q96QA6 119 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 MS4A8Q9BY19 250 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF350Q9GZX5 532 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 PARP12Q9H0J9 701 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 WFDC1Q9HC57 220 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 OR2S2Q9NQN1 319 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 FARSAQ9Y285 508 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 URB1O60287 2271 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 A0A0A6YYD5 115 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 H3BQ15 152 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 RAB27BO00194 218 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 TAAR5O14804 337 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CYB5BO43169 146 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF354AO60765 605 aaPredicted RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 NXPH2O95156 264 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 TK1P04183 234 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 TBPP20226 339 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 IGFALSP35858 605 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 NAA10P41227 235 aaPredicted RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 OR3A1P47881 315 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 KHKP50053 298 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CCL20P78556 96 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 SPOCK1Q08629 439 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF674Q2M3X9 581 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ANKRD55Q3KP44 614 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 KHDRBS2Q5VWX1 349 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 SPSB3Q6PJ21 355 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF227Q86WZ6 799 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 HOGA1Q86XE5 327 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 OR51L1Q8NGJ5 315 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 NEK7Q8TDX7 302 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 GAL3ST3Q96A11 431 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 PTCHD1Q96NR3 888 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 GAL3ST2Q9H3Q3 398 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 C5orf66Q9H5L9 145 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 PRR13Q9NZ81 148 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 FLRT3Q9NZU0 649 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 TRPC4Q9UBN4 977 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 COLEC10Q9Y6Z7 277 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 MUC6Q6W4X9 2439 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 SPTBP11277 2137 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CUL9Q8IWT3 2517 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 C4orf47A7E2U8 309 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 TRDCB7Z8K6 153 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ATXN7O15265 892 aaPredicted RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 HCRTR2O43614 444 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 NME2P1O60361 137 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 RPLP1P05386 114 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ACP1P24666 158 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 SUCLG1P53597 346 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 EIF5AP63241 154 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 NCR3LG1Q68D85 454 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ULK3Q6PHR2 472 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 C16orf54Q6UWD8 224 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF793Q6ZN11 406 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 TMEM156Q8N614 296 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 NAXEQ8NCW5 288 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 OR52E1Q8NGJ3 308 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 NPRL2Q8WTW4 380 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 TMEM239Q8WW34 195 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 GLYATL1Q969I3 302 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 FAM3DQ96BQ1 224 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CNRIP1Q96F85 164 aaPredicted RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 IL17FQ96PD4 163 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CDC6Q99741 560 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ZCCHC3Q9NUD5 404 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 PITPNC1Q9UKF7 332 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CES1P1Q9UKY3 287 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF443Q9Y2A4 671 aaPredicted RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ARHGEF17Q96PE2 2063 aaPredicted RBP4.93□□□□□ -1.62
CSDE1-202ENST00000339438 A0A087WV62 115 aa4.93□□□□□ -1.62
CSDE1-202ENST00000339438 LOC100289279A0A1B0GTE1 492 aa4.93□□□□□ -1.62
CSDE1-202ENST00000339438 SMCO3A2RU48 225 aa4.93□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF736B4DX44 427 aaPredicted RBP4.93□□□□□ -1.62
CSDE1-202ENST00000339438 SLC17A2O00624 439 aa4.93□□□□□ -1.62
CSDE1-202ENST00000339438 C1QL1O75973 258 aa4.93□□□□□ -1.62
CSDE1-202ENST00000339438 DXOO77932 396 aaKnown RBP4.93□□□□□ -1.62
CSDE1-202ENST00000339438 NDUFB8O95169 186 aa4.93□□□□□ -1.62
CSDE1-202ENST00000339438 RAC2P15153 192 aa4.93□□□□□ -1.62
CSDE1-202ENST00000339438 NTSP30990 170 aa4.93□□□□□ -1.62
CSDE1-202ENST00000339438 CEACAM8P31997 349 aaPredicted RBP4.93□□□□□ -1.62
CSDE1-202ENST00000339438 PPP1CCP36873 323 aaKnown RBP4.93□□□□□ -1.62
CSDE1-202ENST00000339438 EFNA3P52797 238 aa4.93□□□□□ -1.62
CSDE1-202ENST00000339438 SLC16A1P53985 500 aa4.93□□□□□ -1.62
CSDE1-202ENST00000339438 NXPH1P58417 271 aa4.93□□□□□ -1.62
CSDE1-202ENST00000339438 PSG6Q00889 435 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms