RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CTAG2O75638 210 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 NRASP01111 189 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ERCC1P07992 297 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 HOXD4P09016 255 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 CECR9P0C854 216 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 CBR1P16152 277 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 IL32P24001 234 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 CCKARP32238 428 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 RFX2P48378 723 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 SRP9P49458 86 aaKnown RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 MMP15P51511 669 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 TAS2R20P59543 309 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 QRFPP83859 136 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 FAM27E3Q08E93 113 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 TBC1D28Q2M2D7 210 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 TMEM255AQ5JRV8 349 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 TMEM69Q5SWH9 247 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 TRIQKQ629K1 86 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 TMEM42Q69YG0 159 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 AWAT2Q6E213 333 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 PYHIN1Q6K0P9 492 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 GLIPR1L1Q6UWM5 242 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 MOB3CQ70IA8 216 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 UTS2BQ765I0 119 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 GDPD3Q7L5L3 318 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 MRPL21Q7Z2W9 205 aaKnown RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 ACBD4Q8NC06 268 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 RELL2Q8NC24 303 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 OR10K1Q8NGX5 313 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 UBASH3BQ8TF42 649 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 RAB40AQ8WXH6 277 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 PIGCQ92535 297 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 YIPF5Q969M3 257 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 TRIM63Q969Q1 353 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 FOXRED1Q96CU9 486 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 CMBLQ96DG6 245 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 S100A16Q96FQ6 103 aaKnown RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 WBP1Q96G27 269 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 BOD1Q96IK1 185 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 NEDD4LQ96PU5 975 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 GPER1Q99527 375 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 UQCC2Q9BRT2 126 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 THAP7Q9BT49 309 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 MRI1Q9BV20 369 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 FGF23Q9GZV9 251 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 C11orf54Q9H0W9 315 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 BANF2Q9H503 90 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ZMAT3Q9HA38 289 aaKnown RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 CDH20Q9HBT6 801 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 ELF5Q9UKW6 265 aaPredicted RBP3.57□□□□□ -1.84
MCF2-201ENST00000338585 SLC25A15Q9Y619 301 aa3.57□□□□□ -1.84
MCF2-201ENST00000338585 POLEQ07864 2286 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 ACACBO00763 2458 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 TRAV18A0A075B6X5 111 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 IGHV1-18A0A0C4DH31 117 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 ZNF816-ZNF321PA0A0X1KG74 233 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 MEIOCA2RUB1 952 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 GGT3PA6NGU5 568 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 DHRS7CA6NNS2 312 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 MSTNO14793 375 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 TPD52L2O43399 206 aaKnown RBP3.56□□□□□ -1.84
MCF2-201ENST00000338585 SPRY1O43609 319 aaPredicted RBP3.56□□□□□ -1.84
MCF2-201ENST00000338585 ANGPTL7O43827 346 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 IGKV3-15P01624 115 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 ALDOBP05062 364 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 FCER2P06734 321 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 PTBP1P26599 531 aaKnown RBP eCLIP3.56□□□□□ -1.84
MCF2-201ENST00000338585 ZNF83P51522 516 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 MTCP1P56278 107 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 SCAND1P57086 179 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 GUCA2AQ02747 115 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 SCN1BQ07699 218 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 MALLQ13021 153 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 EIF2S3LQ2VIR3 472 aaKnown RBP3.56□□□□□ -1.84
MCF2-201ENST00000338585 ALKBH6Q3KRA9 238 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 SLC22A6Q4U2R8 563 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 CLVS2Q5SYC1 327 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 PLCXD3Q63HM9 321 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 OR2T2Q6IF00 324 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 NRARPQ7Z6K4 114 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 GLCCI1Q86VQ1 547 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 CCDC36Q8IYA8 594 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 KDF1Q8NAX2 398 aaPredicted RBP3.56□□□□□ -1.84
MCF2-201ENST00000338585 CCDC54Q8NEL0 328 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 OR52I2Q8NH67 350 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 TNFAIP8L1Q8WVP5 186 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 C10orf35Q96D05 121 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 RNF170Q96K19 258 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 CMTM3Q96MX0 182 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 NICN1Q9BSH3 213 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 PAPOLGQ9BWT3 736 aaKnown RBP3.56□□□□□ -1.84
MCF2-201ENST00000338585 OR2J1Q9GZK6 312 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 NPAP1Q9NZP6 1156 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 MRPL15Q9P015 296 aaKnown RBP3.56□□□□□ -1.84
MCF2-201ENST00000338585 ZNF391Q9UJN7 358 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 CADP27708 2225 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 A0A0A6YYD4 124 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 MEIS3P1A6NDR6 274 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 CD300LBA8K4G0 201 aa3.56□□□□□ -1.84
MCF2-201ENST00000338585 TMEM14DPA8MWL7 114 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms