RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 SOX7Q9BT81 388 aa11.28□□□□□ -0.6
RETREG3-201ENST00000309428 NELFAQ9H3P2 528 aa11.28□□□□□ -0.6
RETREG3-201ENST00000309428 PTGES2Q9H7Z7 377 aa11.28□□□□□ -0.6
RETREG3-201ENST00000309428 CRLF2Q9HC73 371 aa11.28□□□□□ -0.6
RETREG3-201ENST00000309428 FAM212BQ9NTI7 297 aaPredicted RBP11.28□□□□□ -0.6
RETREG3-201ENST00000309428 PCDHGA1Q9Y5H4 931 aa11.28□□□□□ -0.6
RETREG3-201ENST00000309428 R4GN57 208 aa11.28□□□□□ -0.6
RETREG3-201ENST00000309428 A0A1W2PP11 408 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 PHOX2AO14813 284 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 ZNF217O75362 1048 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 CRABP1P29762 137 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 CEBPEQ15744 281 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 NKAIN1Q4KMZ8 207 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 AWAT1Q58HT5 328 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 PGAP1Q75T13 922 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 RTN4RL2Q86UN3 420 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 LRP11Q86VZ4 500 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 FGF11Q92914 225 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 SARGQ9BW04 601 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 UBE2ZQ9H832 354 aaPredicted RBP11.27□□□□□ -0.6
RETREG3-201ENST00000309428 GFOD1Q9NXC2 390 aa11.27□□□□□ -0.6
RETREG3-201ENST00000309428 MRPS18BQ9Y676 258 aaKnown RBP11.27□□□□□ -0.6
RETREG3-201ENST00000309428 VSTM2BA6NLU5 285 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 PIAS2O75928 621 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 QDPRP09417 244 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 MDKP21741 143 aaPredicted RBP11.27□□□□□ -0.61
RETREG3-201ENST00000309428 ATG4DQ86TL0 474 aaPredicted RBP11.27□□□□□ -0.61
RETREG3-201ENST00000309428 PRR18Q8N4B5 295 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 UNKLQ9H9P5 680 aaKnown RBP11.27□□□□□ -0.61
RETREG3-201ENST00000309428 SDHAF3Q9NRP4 125 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 LRFN1Q9P244 771 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 TNFSF18Q9UNG2 199 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 NBEAQ8NFP9 2946 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 PKDREJQ9NTG1 2253 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 CADP27708 2225 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 STMND1H3BQB6 276 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 SCAF4O95104 1147 aaKnown RBP11.27□□□□□ -0.61
RETREG3-201ENST00000309428 TSPO2Q5TGU0 170 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 LPCAT3Q6P1A2 487 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 SLC25A45Q8N413 288 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 ZFP62Q8NB50 900 aaPredicted RBP11.27□□□□□ -0.61
RETREG3-201ENST00000309428 OR5AP2Q8NGF4 316 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 OTOSQ8NHW6 89 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 GLYATL2Q8WU03 294 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 SCARF2Q96GP6 870 aaPredicted RBP11.27□□□□□ -0.61
RETREG3-201ENST00000309428 ZNF764Q96H86 408 aaPredicted RBP11.27□□□□□ -0.61
RETREG3-201ENST00000309428 CNTD2Q9H8S5 307 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 RAB22AQ9UL26 194 aa11.27□□□□□ -0.61
RETREG3-201ENST00000309428 PTRH2Q9Y3E5 179 aaKnown RBP11.27□□□□□ -0.61
RETREG3-201ENST00000309428 LMO7DNF2Z398 122 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 IFNA2P01563 188 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 FCGR2AP12318 317 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 CXCL12P48061 93 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 RPS18P62269 152 aaKnown RBP11.26□□□□□ -0.61
RETREG3-201ENST00000309428 RSU1Q15404 277 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 SSX2Q16385 188 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 JMJD6Q6NYC1 403 aaPredicted RBP11.26□□□□□ -0.61
RETREG3-201ENST00000309428 MRGPREQ86SM8 312 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 C20orf196Q8IYI0 205 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 SLC22A24Q8N4F4 322 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 CLEC1AQ8NC01 280 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 HAS2Q92819 552 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 TCEAL7Q9BRU2 100 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 NICN1Q9BSH3 213 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 OR5AC2Q9NZP5 309 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 KIAA2026Q5HYC2 2103 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 A0A087WZY1 265 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 IGKV1D-43A0A0B4J1Z2 117 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 LINC01387J3KSC0 135 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 GPR37O15354 613 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 CRHP06850 196 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 MPGP29372 298 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 MECP2P51608 486 aaKnown RBP11.26□□□□□ -0.61
RETREG3-201ENST00000309428 EFNA3P52797 238 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 OR2A2Q6IF42 318 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 UBAC2Q8NBM4 344 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 NECAP1Q8NC96 275 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 SLC26A10Q8NG04 563 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 RHOVQ96L33 236 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 OR8B4Q96RC9 309 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 HAO2Q9NYQ3 351 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 RARRES3Q9UL19 164 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 SLC7A11Q9UPY5 501 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 KIAA1549LQ6ZVL6 1849 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 TRAV36DV7A0A075B6V5 113 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 PRSS37A4D1T9 235 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 ZFP92A6NM28 416 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 H3BP45 60 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 PPP1R2P9O14990 202 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 CNOT4O95628 575 aaKnown RBP11.26□□□□□ -0.61
RETREG3-201ENST00000309428 CD37P11049 281 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 RNF4P78317 190 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 ZNF561Q8N587 486 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 TMEM229BQ8NBD8 167 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 LAT2Q9GZY6 243 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 POLE3Q9NRF9 147 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 KLK13Q9UKR3 277 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 MRPS17Q9Y2R5 130 aaKnown RBP11.26□□□□□ -0.61
RETREG3-201ENST00000309428 BOD1L1Q8NFC6 3051 aa11.26□□□□□ -0.61
RETREG3-201ENST00000309428 ZNF106Q9H2Y7 1883 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms