RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ZNF788Q6ZQV5 615 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 LINC00471Q8N535 108 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 KLHDC1Q8N7A1 406 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 PAPD5Q8NDF8 572 aaKnown RBP12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 MRAPQ8TCY5 172 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 CMTM5Q96DZ9 223 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 MEGF9Q9H1U4 602 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 OR10A2Q9H208 303 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 CCDC134Q9H6E4 229 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 ZNF391Q9UJN7 358 aa12.06□□□□□ -0.48
CCDC88B-201ENST00000301897 DHRS12A0PJE2 317 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 SEMG1P04279 462 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 NDUFB7P17568 137 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 PAICSP22234 425 aaKnown RBP12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 SLC25A1P53007 311 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 ELF3P78545 371 aaPredicted RBP12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 OR5T2Q8NGG2 359 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 OR51L1Q8NGJ5 315 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 ANGPTL6Q8NI99 470 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 PPP1R35Q8TAP8 253 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 SGK3Q96BR1 496 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 ITPKCQ96DU7 683 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 GAFA1Q96PS6 74 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 NECAP2Q9NVZ3 263 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 IL20Q9NYY1 176 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 MAGEL2Q9UJ55 1249 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 FOXJ3Q9UPW0 622 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 BAIAP2Q9UQB8 552 aa12.05□□□□□ -0.48
CCDC88B-201ENST00000301897 H0YAE9 185 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 KRT36O76013 467 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 GLCEO94923 617 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 PRB2P02812 416 aaPredicted RBP12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 FABP3P05413 133 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 ACAA1P09110 424 aaPredicted RBP12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 PSKH1P11801 424 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 AMY2BP19961 511 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 RRM2P31350 389 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 PRB3Q04118 309 aaPredicted RBP12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 LYPD4Q6UWN0 246 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 PNKDQ8N490 385 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 ZNF511Q8NB15 262 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 SLC37A3Q8NCC5 494 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 RNF133Q8WVZ7 376 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 ZNRF4Q8WWF5 429 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 SEH1LQ96EE3 360 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 DUS3LQ96G46 650 aaKnown RBP12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 EGLN3Q9H6Z9 239 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 HEXA-AS1Q9H8Q6 139 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 IL1RAPQ9NPH3 570 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 ZNF446Q9NWS9 450 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 SIGLEC9Q9Y336 463 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 RHBDD3Q9Y3P4 386 aa12.04□□□□□ -0.48
CCDC88B-201ENST00000301897 TENM3Q9P273 2699 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 A0A1W2PPH5 198 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 ANGPTL7O43827 346 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 IFNGP01579 166 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 SELLP14151 372 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 SPI1P17947 270 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 DLX1P56177 255 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 GMFBP60983 142 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 MXRA7P84157 204 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 EIF2B1Q14232 305 aaKnown RBP12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 LY6EQ16553 131 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 DGUOKQ16854 277 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 FAM76BQ5HYJ3 339 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 CRIP3Q6Q6R5 217 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 FAM57BQ71RH2 274 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 SHFQ7M4L6 423 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 C11orf44Q8N8P7 122 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 OR4F17Q8NGA8 305 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 OR6K6Q8NGW6 343 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 OR5P3Q8WZ94 311 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 SGCDQ92629 289 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 PGAM5Q96HS1 289 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 OR4F4Q96R69 305 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 CDCA4Q9BXL8 241 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 NMNAT2Q9BZQ4 307 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 WDR13Q9H1Z4 485 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 SNTG1Q9NSN8 517 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 TBC1D23Q9NUY8 699 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 NLKQ9UBE8 527 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 LRP12Q9Y561 859 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 V9GYQ6 96 aa12.03□□□□□ -0.48
CCDC88B-201ENST00000301897 hCG_1809904A0A1W2PP81 198 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 A0A1W2PPE2 198 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 A0A1W2PR64 198 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 A0A1W2PRV1 198 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 OR2AT4A6NND4 320 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 AKR7A2O43488 359 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 FBXO24O75426 580 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 CST4P01036 141 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 VSIG10L2P0DP72 767 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 HMGA2P52926 109 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 ZNF121P58317 390 aaPredicted RBP12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 PRDX4Q13162 271 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 GFOD2Q3B7J2 385 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 KLHL12Q53G59 568 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 SAMD4BQ5PRF9 694 aaKnown RBP12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 RASSF6Q6ZTQ3 369 aa12.02□□□□□ -0.49
CCDC88B-201ENST00000301897 KCTD8Q6ZWB6 473 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms