RNA–Protein interactions for RNA: ENST00000301019.8

CDT1-201, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDT1, Length 3,240 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-201ENST00000301019 HCFC2Q9Y5Z7 792 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 SHANK1Q9Y566 2161 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 ESPL1Q14674 2120 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 DOCK11Q5JSL3 2073 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 COL4A6Q14031 1691 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 H7C4K7 107 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 AQP7O14520 342 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 BCAT2O15382 392 aaPredicted RBP12.8□□□□□ -0.36
CDT1-201ENST00000301019 WASP42768 502 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 FXYD4P59646 89 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 EIF5AP63241 154 aaKnown RBP12.8□□□□□ -0.36
CDT1-201ENST00000301019 UNC119Q13432 240 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 PNLIPRP3Q17RR3 467 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 VHLLQ6RSH7 139 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 RCBTB1Q8NDN9 531 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 FOXQ1Q9C009 403 aa12.8□□□□□ -0.36
CDT1-201ENST00000301019 XKRY2A2RUG3 117 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 ZNF878C9JN71 531 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 XKRYO14609 159 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 CLEC3AO75596 197 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 JTBO76095 146 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 SFT2D2O95562 160 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 EFEMP2O95967 443 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 CSTAP01040 98 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 ACAA2P42765 397 aaKnown RBP12.79□□□□□ -0.36
CDT1-201ENST00000301019 RUNX2Q13950 521 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 HERPUD1Q15011 391 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 TOMM20Q15388 145 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 MLF2Q15773 248 aaPredicted RBP12.79□□□□□ -0.36
CDT1-201ENST00000301019 ASB13Q8WXK3 278 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 GPHA2Q96T91 129 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 PRRX2Q99811 253 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 APBB3O95704 486 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 NUDT14O95848 222 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 IGKV1D-16P01601 117 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 RBMXP38159 391 aaKnown RBP12.79□□□□□ -0.36
CDT1-201ENST00000301019 IDH3GP51553 393 aaPredicted RBP12.79□□□□□ -0.36
CDT1-201ENST00000301019 CSNK2A1P68400 391 aaPredicted RBP12.79□□□□□ -0.36
CDT1-201ENST00000301019 RSPO4Q2I0M5 234 aaPredicted RBP12.79□□□□□ -0.36
CDT1-201ENST00000301019 ZNF260Q3ZCT1 412 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 ANGPTL5Q86XS5 388 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 CSNK2A3Q8NEV1 391 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 OR52R1Q8NGF1 315 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 ZNF461Q8TAF7 563 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 BADQ92934 168 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 MALSU1Q96EH3 234 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 SPACA7Q96KW9 195 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 ZNF558Q96NG5 402 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 SCRT1Q9BWW7 348 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 MAGT1Q9H0U3 335 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 RNF24Q9Y225 148 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 PPIL1Q9Y3C6 166 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 SIAH2O43255 324 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 ONECUT2O95948 504 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 IRF2P14316 349 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 PMELP40967 661 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 APOBEC1P41238 236 aaKnown RBP12.79□□□□□ -0.36
CDT1-201ENST00000301019 CLDN17P56750 224 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 VAMP2P63027 116 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 FAM189A2Q15884 450 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 TDRG1Q3Y452 100 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 MYO7BQ6PIF6 2116 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 DPY19L2P2Q6ZN68 376 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 SPRED2Q7Z698 418 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 OR6X1Q8NH79 312 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 NIPSNAP3BQ9BS92 247 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 VN1R1Q9GZP7 353 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 FOXD3Q9UJU5 478 aaPredicted RBP12.79□□□□□ -0.36
CDT1-201ENST00000301019 LTBP2Q14767 1821 aa12.79□□□□□ -0.36
CDT1-201ENST00000301019 LOC107986453A0A1B0GWG9 222 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 TBX19O60806 448 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 ELLP55199 621 aaPredicted RBP12.78□□□□□ -0.36
CDT1-201ENST00000301019 SLC37A1P57057 533 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 BPIFB3P59826 476 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 COL10A1Q03692 680 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 SRSF4Q08170 494 aaKnown RBP12.78□□□□□ -0.36
CDT1-201ENST00000301019 Q6ZNB5 142 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 OR2AJ1Q8NGZ0 328 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 OR2G3Q8NGZ4 309 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 FNDC9Q8TBE3 224 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 MSL2Q9HCI7 577 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 YBX2Q9Y2T7 364 aaKnown RBP12.78□□□□□ -0.36
CDT1-201ENST00000301019 RHBDD3Q9Y3P4 386 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 PRUNE2Q8WUY3 3088 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 TRBV6-7A0A0A0MS04 114 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 PVRP15151 417 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 PNLIPP16233 465 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 TDGF1P3P51864 188 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 RAB4BP61018 213 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 GGTLC2Q14390 218 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 MAJINQ3KP22 176 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 PSRC1Q6PGN9 363 aaPredicted RBP12.78□□□□□ -0.36
CDT1-201ENST00000301019 CBLN3Q6UW01 205 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 ZNF66Q6ZN08 573 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 SLC39A11Q8N1S5 342 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 EXD3Q8N9H8 876 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 CPEB3Q8NE35 698 aaKnown RBP12.78□□□□□ -0.36
CDT1-201ENST00000301019 OR5H2Q8NGV7 314 aa12.78□□□□□ -0.36
CDT1-201ENST00000301019 RNASE8Q8TDE3 154 aaKnown RBP12.78□□□□□ -0.36
CDT1-201ENST00000301019 SDSLQ96GA7 329 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms