RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 OR6X1Q8NH79 312 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 MOGAT1Q96PD6 335 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 HSBP1L1C9JCN9 74 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 HMGA2P52926 109 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 WDR38Q5JTN6 314 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 PINX1Q96BK5 328 aaKnown RBP16.54■□□□□ 0.24
PCDH1-201ENST00000287008 RAB1BQ9H0U4 201 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 SLC26A1Q9H2B4 701 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 A0A1W2PPV9 198 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 FTH1P19P0C7X4 201 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 CTLA4P16410 223 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 TNFAIP6P98066 277 aaPredicted RBP16.54■□□□□ 0.24
PCDH1-201ENST00000287008 CD226Q15762 336 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 RAB1CQ92928 201 aa16.54■□□□□ 0.24
PCDH1-201ENST00000287008 CIB3Q96Q77 187 aaPredicted RBP16.54■□□□□ 0.24
PCDH1-201ENST00000287008 SF3B5Q9BWJ5 86 aaKnown RBP16.54■□□□□ 0.24
PCDH1-201ENST00000287008 H3BMH7 237 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 ST8SIA5O15466 376 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 CSN1S1P47710 185 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 PSMB3P49720 205 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 PNLIPRP3Q17RR3 467 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 MOB3BQ86TA1 216 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 PELI1Q96FA3 418 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 EPOPA6NHQ4 379 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 PRDX4Q13162 271 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 TSPAN32Q96QS1 320 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 RHNO1Q9BSD3 238 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 NPAP1Q9NZP6 1156 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 TMEFF2Q9UIK5 374 aaPredicted RBP16.53■□□□□ 0.24
PCDH1-201ENST00000287008 CCL3P10147 92 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 CDKN2AP42771 156 aaKnown RBP16.53■□□□□ 0.24
PCDH1-201ENST00000287008 LYPD8Q6UX82 237 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 FBXO8Q9NRD0 319 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 C1QAP02745 245 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 OR10J4P0C629 311 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 ELLP55199 621 aaPredicted RBP16.53■□□□□ 0.24
PCDH1-201ENST00000287008 ASAH1Q13510 395 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 KISS1Q15726 138 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 UBE3DQ7Z6J8 389 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 ZFP82Q8N141 532 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 OR2G3Q8NGZ4 309 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 MARCH1Q8TCQ1 289 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 FZR1Q9UM11 496 aa16.53■□□□□ 0.24
PCDH1-201ENST00000287008 PATE4P0C8F1 98 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 SVBPQ8N300 66 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 PTDSS2Q9BVG9 487 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 SCN3AQ9NY46 2000 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 GPR37O15354 613 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 NGFP01138 241 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 OR5G3P0C626 314 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 PPP1CBP62140 327 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 THSD4Q6ZMP0 1018 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 OR8U1Q8NH10 309 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 SFT2D1Q8WV19 159 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 SLC39A7Q92504 469 aa16.52■□□□□ 0.24
PCDH1-201ENST00000287008 ZNF638Q14966 1978 aaKnown RBP16.52■□□□□ 0.23
PCDH1-201ENST00000287008 MN1Q10571 1320 aaPredicted RBP16.52■□□□□ 0.23
PCDH1-201ENST00000287008 HIST2H3PS2Q5TEC6 136 aa16.52■□□□□ 0.23
PCDH1-201ENST00000287008 TM4SF19Q96DZ7 209 aa16.52■□□□□ 0.23
PCDH1-201ENST00000287008 FYTTD1Q96QD9 318 aaKnown RBP16.52■□□□□ 0.23
PCDH1-201ENST00000287008 CHST6Q9GZX3 395 aa16.52■□□□□ 0.23
PCDH1-201ENST00000287008 CRYBA1P05813 215 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 PIGPP57054 158 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 SFTPA2Q8IWL1 248 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 C15orf54Q8N8G6 183 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 DYNC2LI1Q8TCX1 351 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 TAAR6Q96RI8 345 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 RNF32Q9H0A6 362 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 AQP7O14520 342 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 ZFPL1O95159 310 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 SAMD10Q9BYL1 202 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 ZNF831Q5JPB2 1677 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 FOXS1O43638 330 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 AGFG2O95081 481 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 RAB4AP20338 218 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 ADGRG3Q86Y34 549 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 DDOQ99489 341 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 STRAPQ9Y3F4 350 aaKnown RBP16.51■□□□□ 0.23
PCDH1-201ENST00000287008 XRCC3O43542 346 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 NPEPL1Q8NDH3 523 aa16.51■□□□□ 0.23
PCDH1-201ENST00000287008 ZNF501Q96CX3 271 aaPredicted RBP16.51■□□□□ 0.23
PCDH1-201ENST00000287008 SPTAN1Q13813 2472 aaKnown RBP16.51■□□□□ 0.23
PCDH1-201ENST00000287008 DHODHQ02127 395 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 BAMBIQ13145 260 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 MOB1BQ7L9L4 216 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 PTPMT1Q8WUK0 201 aaPredicted RBP16.5■□□□□ 0.23
PCDH1-201ENST00000287008 TMEM230Q96A57 120 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 PLPPR2Q96GM1 343 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 NIPSNAP3BQ9BS92 247 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 TPPP3Q9BW30 176 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 ONECUT1Q9UBC0 465 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 ATPIF1Q9UII2 106 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 OR5B21A6NL26 309 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 LRP3O75074 770 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 EIF4EBP2Q13542 120 aaPredicted RBP16.5■□□□□ 0.23
PCDH1-201ENST00000287008 VMA21Q3ZAQ7 101 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 BSCL2Q96G97 398 aaPredicted RBP16.5■□□□□ 0.23
PCDH1-201ENST00000287008 AMDHD2Q9Y303 409 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 C3AR1Q16581 482 aa16.5■□□□□ 0.23
PCDH1-201ENST00000287008 C1QL3Q5VWW1 255 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms