RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TMEM50BP56557 158 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 HSD11B2P80365 405 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 TOMM20Q15388 145 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 CDCP2Q5VXM1 449 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 LPCAT3Q6P1A2 487 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 DRAM2Q6UX65 266 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 CLEC9AQ6UXN8 241 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 FAM57BQ71RH2 274 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 NKAIN3Q8N8D7 197 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 NAXEQ8NCW5 288 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 TMEM230Q96A57 120 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 RAB3CQ96E17 227 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 OR10C1Q96KK4 312 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 METTL8Q9H825 291 aaKnown RBP8.88□□□□□ -0.99
LIG3-201ENST00000262327 ELL3Q9HB65 397 aaPredicted RBP8.88□□□□□ -0.99
LIG3-201ENST00000262327 SERINC1Q9NRX5 453 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 TNRC6BQ9UPQ9 1833 aaKnown RBP8.88□□□□□ -0.99
LIG3-201ENST00000262327 ZNF729A6NN14 1252 aaPredicted RBP8.88□□□□□ -0.99
LIG3-201ENST00000262327 DUS4LO95620 317 aaKnown RBP8.88□□□□□ -0.99
LIG3-201ENST00000262327 S100A8P05109 93 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 RCC1P18754 421 aaPredicted RBP8.88□□□□□ -0.99
LIG3-201ENST00000262327 ZNF121P58317 390 aaPredicted RBP8.88□□□□□ -0.99
LIG3-201ENST00000262327 DCAF7P61962 342 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 SHBQ15464 509 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 ANKRD55Q3KP44 614 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 H3F3CQ6NXT2 135 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 DNM1P34Q6PK57 102 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 CLEC18BQ6UXF7 455 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 C1QL2Q7Z5L3 287 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 SLC38A9Q8NBW4 561 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 OR8B12Q8NGG6 310 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 OR4A4PQ8NGN8 299 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 PFDN5Q99471 154 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 PIGMQ9H3S5 423 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 CHST11Q9NPF2 352 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 LHFPL6Q9Y693 200 aa8.88□□□□□ -0.99
LIG3-201ENST00000262327 SFTPBP07988 381 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 AKR1C3P42330 323 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 DAP3P51398 398 aaKnown RBP8.87□□□□□ -0.99
LIG3-201ENST00000262327 MMP16P51512 607 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 CLRN1P58418 232 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 MYBPHQ13203 477 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 OR2B11Q5JQS5 317 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 ACER2Q5QJU3 275 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 BAP18Q8IXM2 172 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 SLC25A45Q8N413 288 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 ZDHHC22Q8N966 263 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 PNLDC1Q8NA58 520 aaKnown RBP8.87□□□□□ -0.99
LIG3-201ENST00000262327 MYOZ1Q9NP98 299 aaPredicted RBP8.87□□□□□ -0.99
LIG3-201ENST00000262327 FGF21Q9NSA1 209 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 SLC2A8Q9NY64 477 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 TECTAO75443 2155 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 NCOA6Q14686 2063 aaPredicted RBP8.87□□□□□ -0.99
LIG3-201ENST00000262327 CPAMD8Q8IZJ3 1885 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 NUDT21O43809 227 aaKnown RBP8.87□□□□□ -0.99
LIG3-201ENST00000262327 FBXO24O75426 580 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 IGHMP01871 453 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 GLI4P10075 376 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 RAB6AP20340 208 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 EPHA8P29322 1005 aaPredicted RBP8.87□□□□□ -0.99
LIG3-201ENST00000262327 PCP4P48539 62 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 RIPPLY1Q0D2K3 151 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 RAB32Q13637 225 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 ETV3LQ6ZN32 361 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 CARFQ8N187 725 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 TERB2Q8NHR7 220 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 STT3BQ8TCJ2 826 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 TMEM234Q8WY98 164 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 DUSP23Q9BVJ7 150 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 SMIM3Q9BZL3 60 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 GHRLQ9UBU3 117 aa8.87□□□□□ -0.99
LIG3-201ENST00000262327 IGHV1OR21-1A0A087WYE8 117 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 A0A0A6YYH2 397 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 A6NIZ1 184 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 A6NJ64 397 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 TERTO14746 1132 aaKnown RBP8.86□□□□□ -0.99
LIG3-201ENST00000262327 BPNT1O95861 308 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 SERPINA5P05154 406 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 CRYBA1P05813 215 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 TPT1P13693 172 aaKnown RBP8.86□□□□□ -0.99
LIG3-201ENST00000262327 NDUFB7P17568 137 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 AMY2BP19961 511 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 NME2P22392 152 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 RAP1BP61224 184 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 RAP1AP62834 184 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 PHF19Q5T6S3 580 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 PGAP1Q75T13 922 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 HOGA1Q86XE5 327 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 DTX1Q86Y01 620 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 OR5AS1Q8N127 324 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 ZNF441Q8N8Z8 693 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 NUBPLQ8TB37 319 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 CA5BP1Q8WTZ4 195 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 OR5B2Q96R09 309 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 TMEM59Q9BXS4 323 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 CHRNA10Q9GZZ6 450 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 CYTL1Q9NRR1 136 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 B3GAT1Q9P2W7 334 aa8.86□□□□□ -0.99
LIG3-201ENST00000262327 ZNF629Q9UEG4 869 aaPredicted RBP8.86□□□□□ -0.99
LIG3-201ENST00000262327 VSTM2BA6NLU5 285 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms