RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 OR2F2O95006 317 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 RAB3AP20336 220 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 GABRR1P24046 479 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 CD27P26842 260 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 GALNSP34059 522 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 SNU13P55769 128 aaKnown RBP9.37□□□□□ -0.91
USP28-201ENST00000003302 NXPH1P58417 271 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 OR2F1Q13607 317 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 TMEM244Q5VVB8 128 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 RBMS3Q6XE24 437 aaKnown RBP9.37□□□□□ -0.91
USP28-201ENST00000003302 SYT13Q7L8C5 426 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 GTPBP8Q8N3Z3 284 aaPredicted RBP9.37□□□□□ -0.91
USP28-201ENST00000003302 HS3ST6Q96QI5 342 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 AIFM2Q9BRQ8 373 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 SCPEP1Q9HB40 452 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 ELL3Q9HB65 397 aaPredicted RBP9.37□□□□□ -0.91
USP28-201ENST00000003302 PCDHB16Q9NRJ7 776 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 CRIM1Q9NZV1 1036 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 MED12LQ86YW9 2145 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 A0A0D9SG52 128 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 F8W036 122 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 WDPCPO95876 746 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 IFNA6P05013 189 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 HSD11B1P28845 292 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 BLOC1S1P78537 153 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 ZNF345Q14585 488 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 ZNF248Q8NDW4 579 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 THAP6Q8TBB0 222 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 SSC4DQ8WTU2 575 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 GPER1Q99527 375 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 PRRT1Q99946 306 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 TMEM59Q9BXS4 323 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 ZNF701Q9NV72 531 aaPredicted RBP9.37□□□□□ -0.91
USP28-201ENST00000003302 ZFHX3Q15911 3703 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 A0A0G2JMM0 328 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 A0A1W2PPB8 328 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 A0A1W2PRS3 328 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 TTLL8A6PVC2 850 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 KIR3DP1A8MWS1 328 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 FGF16O43320 207 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 CD63P08962 238 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 SLC6A9P48067 706 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 KISS1Q15726 138 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 ZNF528Q3MIS6 628 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 NUP54Q7Z3B4 507 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 BAP18Q8IXM2 172 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 FGFBP3Q8TAT2 258 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 METTL21EPA6NDL7 271 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 OR11L1Q8NGX0 322 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 MFSD8Q8NHS3 518 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 C15orf40Q8WUR7 153 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 MRPL24Q96A35 216 aaKnown RBP9.37□□□□□ -0.91
USP28-201ENST00000003302 IP6K3Q96PC2 410 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 CCNL2Q96S94 520 aaPredicted RBP9.37□□□□□ -0.91
USP28-201ENST00000003302 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.37□□□□□ -0.91
USP28-201ENST00000003302 OCIAD1Q9NX40 245 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 EHFQ9NZC4 300 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 RABL2BQ9UNT1 228 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 AMDHD2Q9Y303 409 aa9.37□□□□□ -0.91
USP28-201ENST00000003302 ANKUB1A6NFN9 424 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 GLAP06280 429 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 BLVRBP30043 206 aaPredicted RBP9.36□□□□□ -0.91
USP28-201ENST00000003302 ARFRP1Q13795 201 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 TAF9Q16594 264 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 OGFOD3Q6PK18 319 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 INO80EQ8NBZ0 244 aaPredicted RBP9.36□□□□□ -0.91
USP28-201ENST00000003302 OR5D14Q8NGL3 314 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 SPSB2Q99619 263 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 FAAP24Q9BTP7 215 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 SH3BGRL3Q9H299 93 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 CCDC163A0A0D9SF12 145 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 F8VVB4 439 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 F8VWA3 439 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 EIF3GO75821 320 aaKnown RBP eCLIP9.36□□□□□ -0.91
USP28-201ENST00000003302 DIRAS3O95661 229 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 CRYBA1P05813 215 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 CD79AP11912 226 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 ZNF708P17019 499 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 HLA-GP17693 338 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 CLDN17P56750 224 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 CLRN1P58418 232 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 DAZAP2Q15038 168 aaPredicted RBP9.36□□□□□ -0.91
USP28-201ENST00000003302 NKAIN1Q4KMZ8 207 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 OR10H5Q8NGA6 315 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 RXFP4Q8TDU9 374 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 TREM1Q9NP99 234 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 UPB1Q9UBR1 384 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 PCDHGA1Q9Y5H4 931 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 EP300Q09472 2414 aaPredicted RBP9.36□□□□□ -0.91
USP28-201ENST00000003302 TEX13DA0A0J9YY54 714 aaPredicted RBP9.36□□□□□ -0.91
USP28-201ENST00000003302 CHAF1BQ13112 559 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 ZNF283Q8N7M2 679 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 NAA11Q9BSU3 229 aaPredicted RBP9.36□□□□□ -0.91
USP28-201ENST00000003302 RABL2AQ9UBK7 228 aaPredicted RBP9.36□□□□□ -0.91
USP28-201ENST00000003302 FLVCR1Q9Y5Y0 555 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 USF3Q68DE3 2245 aa9.36□□□□□ -0.91
USP28-201ENST00000003302 CD80P33681 288 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 GABREP78334 506 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 FGL1Q08830 312 aa9.35□□□□□ -0.91
USP28-201ENST00000003302 SCRN3Q0VDG4 424 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms