RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 CAPGP40121 348 aa15.42■□□□□ 0.06
CLN3-259ENST00000637551 MAB21L1Q13394 359 aa15.42■□□□□ 0.06
CLN3-259ENST00000637551 LRRC36Q1X8D7 754 aa15.42■□□□□ 0.06
CLN3-259ENST00000637551 LIPNQ5VXI9 398 aa15.42■□□□□ 0.06
CLN3-259ENST00000637551 RFLNBQ8N5W9 214 aa15.42■□□□□ 0.06
CLN3-259ENST00000637551 OR11L1Q8NGX0 322 aa15.42■□□□□ 0.06
CLN3-259ENST00000637551 LGALS12Q96DT0 336 aa15.42■□□□□ 0.06
CLN3-259ENST00000637551 TLNRD1Q9H1K6 362 aa15.42■□□□□ 0.06
CLN3-259ENST00000637551 ZNF816-ZNF321PA0A0X1KG74 233 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 DAPL1A0PJW8 107 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 ERICH4A6NGS2 130 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 F5H5P2 479 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 IGHV2-70P01814 119 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 UBCP0CG48 685 aaKnown RBP15.41■□□□□ 0.06
CLN3-259ENST00000637551 DCKP27707 260 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 MDH2P40926 338 aaKnown RBP15.41■□□□□ 0.06
CLN3-259ENST00000637551 CCR9P51686 369 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 CDH15P55291 814 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 BTG1P62324 171 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 ZNF85Q03923 595 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 RIPPLY1Q0D2K3 151 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 GALEQ14376 348 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 FAM76BQ5HYJ3 339 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 FAM166AQ6J272 317 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 DOK3Q7L591 496 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 CATSPERDQ86XM0 798 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 YIPF7Q8N8F6 280 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 LINC01356Q8N9X3 169 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 CLDND2Q8NHS1 167 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 APH1BQ8WW43 257 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 ITPKCQ96DU7 683 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 FGF20Q9NP95 211 aaPredicted RBP15.41■□□□□ 0.06
CLN3-259ENST00000637551 BRD7Q9NPI1 651 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 OR52A1Q9UKL2 312 aa15.41■□□□□ 0.06
CLN3-259ENST00000637551 H0YHG0 523 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 FAM20BO75063 409 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 WBP4O75554 376 aaKnown RBP15.4■□□□□ 0.06
CLN3-259ENST00000637551 PNPP00491 289 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 IRF2P14316 349 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 LMO4P61968 165 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 KCNJ8Q15842 424 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 SSX6Q7RTT6 188 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 LRRC28Q86X40 367 aaPredicted RBP15.4■□□□□ 0.06
CLN3-259ENST00000637551 C8orf59Q8N0T1 100 aaPredicted RBP15.4■□□□□ 0.06
CLN3-259ENST00000637551 SEMA6DQ8NFY4 1073 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 OR8S1Q8NH09 359 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 FBLIM1Q8WUP2 373 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 CYGBQ8WWM9 190 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 LYZL4Q96KX0 146 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 TECTBQ96PL2 329 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 MICU1Q9BPX6 476 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 RTL8AQ9BWD3 113 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 PAPOLGQ9BWT3 736 aaKnown RBP15.4■□□□□ 0.06
CLN3-259ENST00000637551 GPR84Q9NQS5 396 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 LPAR3Q9UBY5 353 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 N6AMT1Q9Y5N5 214 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 CACNG2Q9Y698 323 aa15.4■□□□□ 0.06
CLN3-259ENST00000637551 PPIAL4EA0A075B759 164 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 PPIAL4CA0A0B4J2A2 164 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 OR5B21A6NL26 309 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 A8MV72 311 aaPredicted RBP15.39■□□□□ 0.05
CLN3-259ENST00000637551 PPIAL4DF5H284 164 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 H0YL77 283 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 PSMD9O00233 223 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 IGHV2-5P01817 119 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 HLA-DPB1P04440 258 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 ISG15P05161 165 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 PPIAL4FP0DN26 164 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 PIPP12273 146 aaPredicted RBP15.39■□□□□ 0.05
CLN3-259ENST00000637551 ACKR3P25106 362 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 DVL1P1P54792 670 aaPredicted RBP15.39■□□□□ 0.05
CLN3-259ENST00000637551 CSNK2BP67870 215 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 MFGE8Q08431 387 aaPredicted RBP15.39■□□□□ 0.05
CLN3-259ENST00000637551 C11orf91Q3C1V1 193 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 TMEM42Q69YG0 159 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 KLHL36Q8N4N3 616 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 TEX29Q8N6K0 151 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 MAPK1IP1LQ8NDC0 245 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 OR51E1Q8TCB6 317 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 RORBQ92753 470 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 TFAP2CQ92754 450 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 MSI2Q96DH6 328 aaKnown RBP15.39■□□□□ 0.05
CLN3-259ENST00000637551 ENPP5Q9UJA9 477 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 SLC22A13Q9Y226 551 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 POLR3KQ9Y2Y1 108 aaPredicted RBP15.39■□□□□ 0.05
CLN3-259ENST00000637551 V9GYS6 101 aa15.39■□□□□ 0.05
CLN3-259ENST00000637551 NDUFA2O43678 99 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 GATA3P23771 443 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 HSPA13P48723 471 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 MED21Q13503 144 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 GFOD2Q3B7J2 385 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 SPRNQ5BIV9 151 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 ZDHHC23Q8IYP9 409 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 OR51F2Q8NH61 342 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 OR5P3Q8WZ94 311 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 TBX5Q99593 518 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 GAL3ST1Q99999 423 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 ZNF665Q9H7R5 613 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 PLCXD1Q9NUJ7 323 aa15.38■□□□□ 0.05
CLN3-259ENST00000637551 CNOT2Q9NZN8 540 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms