RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TUBG2Q9NRH3 451 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 CYSLTR2Q9NS75 346 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 IL19Q9UHD0 177 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 PPP1R3CQ9UQK1 317 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 SIRT4Q9Y6E7 314 aaPredicted RBP11.36□□□□□ -0.59
LINC00540-202ENST00000616974 H0YAE9 185 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 MPZL2O60487 215 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 TFF1P04155 84 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 GRPP07492 148 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 ERCC1P07992 297 aaPredicted RBP11.35□□□□□ -0.59
LINC00540-202ENST00000616974 USF1P22415 310 aaPredicted RBP11.35□□□□□ -0.59
LINC00540-202ENST00000616974 GPR6P46095 362 aaPredicted RBP11.35□□□□□ -0.59
LINC00540-202ENST00000616974 RIPK1Q13546 671 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 ZNF829Q3KNS6 432 aaPredicted RBP11.35□□□□□ -0.59
LINC00540-202ENST00000616974 BCL2L15Q5TBC7 163 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 AHSA2Q719I0 299 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 C11orf53Q8IXP5 236 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 BATF2Q8N1L9 274 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 OR2G2Q8NGZ5 317 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 PIGCQ92535 297 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 TMEM106BQ9NUM4 274 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 MRPS18AQ9NVS2 196 aaKnown RBP11.35□□□□□ -0.59
LINC00540-202ENST00000616974 KIAA2026Q5HYC2 2103 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 A0A0U1RQV5 110 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 IGHV4-31P0DP07 118 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 EGR1P18146 543 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 DCTDP32321 178 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 GMFBP60983 142 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 RAB40BQ12829 278 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 PRDX4Q13162 271 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 GALEQ14376 348 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 ZMYND11Q15326 602 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 MOGQ16653 247 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 CLEC9AQ6UXN8 241 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 ZFP41Q8N8Y5 198 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 MSI2Q96DH6 328 aaKnown RBP11.35□□□□□ -0.59
LINC00540-202ENST00000616974 MNTQ99583 582 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 PDCD1LG2Q9BQ51 273 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 MRPL15Q9P015 296 aaKnown RBP11.35□□□□□ -0.59
LINC00540-202ENST00000616974 PIGLQ9Y2B2 252 aa11.35□□□□□ -0.59
LINC00540-202ENST00000616974 RPL36Q9Y3U8 105 aaKnown RBP11.35□□□□□ -0.59
LINC00540-202ENST00000616974 PHYHO14832 338 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 SULT1C4O75897 302 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 SLC25A16P16260 332 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 ZNF16P17020 682 aaPredicted RBP11.34□□□□□ -0.59
LINC00540-202ENST00000616974 LIPAP38571 399 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 LMO4P61968 165 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 LOXL1Q08397 574 aaPredicted RBP11.34□□□□□ -0.59
LINC00540-202ENST00000616974 ST3GAL4Q11206 333 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 HFEQ30201 348 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 SFRP4Q6FHJ7 346 aaPredicted RBP11.34□□□□□ -0.59
LINC00540-202ENST00000616974 THAP5Q7Z6K1 395 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 OR14K1Q8NGZ2 314 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 NPRL2Q8WTW4 380 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 Q96MT0 163 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 NKX3-1Q99801 234 aaPredicted RBP11.34□□□□□ -0.59
LINC00540-202ENST00000616974 FGF20Q9NP95 211 aaPredicted RBP11.34□□□□□ -0.59
LINC00540-202ENST00000616974 C8orf4Q9NR00 106 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 UBAP1Q9NZ09 502 aa11.34□□□□□ -0.59
LINC00540-202ENST00000616974 CGGBP1Q9UFW8 167 aaPredicted RBP11.34□□□□□ -0.59
LINC00540-202ENST00000616974 LOC107986453A0A1B0GWG9 222 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 FADS2O95864 444 aaKnown RBP11.33□□□□□ -0.6
LINC00540-202ENST00000616974 APOC1P02654 83 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 TACSTD2P09758 323 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 ZNF154Q13106 437 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 BOLLQ8N9W6 283 aaKnown RBP11.33□□□□□ -0.6
LINC00540-202ENST00000616974 RGP1Q92546 391 aaPredicted RBP11.33□□□□□ -0.6
LINC00540-202ENST00000616974 RPL3LQ92901 407 aaKnown RBP11.33□□□□□ -0.6
LINC00540-202ENST00000616974 GPR173Q9NS66 373 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 SNX5Q9Y5X3 404 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 PNMA8CA0A1B0GUJ8 204 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 A0A1B0GW55 424 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 ISPDA4D126 451 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 TMEM178BH3BS89 294 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 NDUFS8O00217 210 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 FCN3O75636 299 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 DUX4L2P0CJ85 424 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 DUX4L3P0CJ86 424 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 DUX4L4P0CJ87 422 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 DUX4L5P0CJ88 424 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 DUX4L6P0CJ89 424 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 DUX4L7P0CJ90 424 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 CD200P41217 278 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 GPM6AP51674 278 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 DSCR9P59020 149 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 ACTC1P68032 377 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 ACTA1P68133 377 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 ZMAT1Q5H9K5 638 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 DUX4L9Q6RFH8 374 aaPredicted RBP11.33□□□□□ -0.6
LINC00540-202ENST00000616974 PLPP7Q8NBV4 271 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 ZNF485Q8NCK3 441 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 SETD9Q8NE22 299 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 DEFB108BQ8NET1 73 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 OR13C5Q8NGS8 318 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 ORAI1Q96D31 301 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 ADAT3Q96EY9 351 aaPredicted RBP11.33□□□□□ -0.6
LINC00540-202ENST00000616974 EGLN1Q9GZT9 426 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 DUX4Q9UBX2 424 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 PSORS1C1Q9UIG5 152 aa11.33□□□□□ -0.6
LINC00540-202ENST00000616974 ANKRD61A6NGH8 418 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms