RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ELLP55199 621 aaPredicted RBP9.12□□□□□ -0.95
VPS39-214ENST00000614932 CRMP1Q14194 572 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 FAM71E1Q6IPT2 247 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 LEG1Q6P5S2 330 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 PRSS54Q6PEW0 395 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 SLC25A42Q86VD7 318 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 CMTM1Q8IZ96 169 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 OR4C5Q8NGB2 326 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 OR5D18Q8NGL1 313 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 OR2V1Q8NHB1 315 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 DOK4Q8TEW6 326 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 COX14Q96I36 57 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 GINS3Q9BRX5 216 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 TPSD1Q9BZJ3 242 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 PARP12Q9H0J9 701 aaKnown RBP9.12□□□□□ -0.95
VPS39-214ENST00000614932 DPEP2Q9H4A9 486 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 SMDT1Q9H4I9 107 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 NAGKQ9UJ70 344 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 A0A0C4DFX4 3053 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 TRAV39A0A0B4J263 110 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 XKRY2A2RUG3 117 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 XKRYO14609 159 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 TMPRSS11DO60235 418 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 LYL1P12980 280 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 AK4P27144 223 aaPredicted RBP9.12□□□□□ -0.95
VPS39-214ENST00000614932 PRSS3P35030 304 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 IL13RA1P78552 427 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 ZNF85Q03923 595 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 PPP1R1AQ13522 171 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 PMS2P11Q13670 270 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 SLC9A3R2Q15599 337 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 METRNLQ641Q3 311 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 VWA1Q6PCB0 445 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 PRSS57Q6UWY2 283 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 MCEMP1Q8IX19 187 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 OR4X1Q8NH49 305 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 OR5AK2Q8NH90 309 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 ANKRD9Q96BM1 317 aaPredicted RBP9.12□□□□□ -0.95
VPS39-214ENST00000614932 ZNF607Q96SK3 696 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 CDH20Q9HBT6 801 aa9.12□□□□□ -0.95
VPS39-214ENST00000614932 FOXD3Q9UJU5 478 aaPredicted RBP9.12□□□□□ -0.95
VPS39-214ENST00000614932 P2RX6O15547 441 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 CNOT4O95628 575 aaKnown RBP9.11□□□□□ -0.95
VPS39-214ENST00000614932 CSTAP01040 98 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 HOXB2P14652 356 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 UCP3P55916 312 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 UBE2G2P60604 165 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 LTBQ06643 244 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 SPOCK1Q08629 439 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 CDK5R1Q15078 307 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 HIKESHIQ53FT3 197 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 ALG10BQ5I7T1 473 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 RPUSD3Q6P087 351 aaKnown RBP9.11□□□□□ -0.95
VPS39-214ENST00000614932 ZNF765Q7L2R6 523 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 MYPOPQ86VE0 399 aaPredicted RBP9.11□□□□□ -0.95
VPS39-214ENST00000614932 DND1Q8IYX4 353 aaKnown RBP9.11□□□□□ -0.95
VPS39-214ENST00000614932 KDM8Q8N371 416 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 NOXO1Q8NFA2 376 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 OR2T33Q8NG76 320 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 CCL4L1Q8NHW4 92 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 LINC00615Q96LM1 132 aaPredicted RBP9.11□□□□□ -0.95
VPS39-214ENST00000614932 PRRC1Q96M27 445 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 ZNF587Q96SQ5 575 aaPredicted RBP9.11□□□□□ -0.95
VPS39-214ENST00000614932 HDAC8Q9BY41 377 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 ANGPTL4Q9BY76 406 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 TBL1XR1Q9BZK7 514 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 MED20Q9H944 212 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 A4GALTQ9NPC4 353 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 ZNF281Q9Y2X9 895 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 SCN3AQ9NY46 2000 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 A0A1B0GW64 132 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 A0A1W2PPV9 198 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 TLCD2A6NGC4 264 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 PIN1P1O15428 100 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 EML2O95834 649 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 CSTBP04080 98 aaKnown RBP9.11□□□□□ -0.95
VPS39-214ENST00000614932 MRPL3P09001 348 aaKnown RBP9.11□□□□□ -0.95
VPS39-214ENST00000614932 GZMHP20718 246 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 RANP62826 216 aaKnown RBP9.11□□□□□ -0.95
VPS39-214ENST00000614932 FAM3AP98173 230 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 OCIAD2Q56VL3 154 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 MED25Q71SY5 747 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 SHISA5Q8N114 240 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 TMEM229BQ8NBD8 167 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 OR51F2Q8NH61 342 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 DNASE2BQ8WZ79 361 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 TMEM106AQ96A25 262 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 OR5AC2Q9NZP5 309 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 DOCK8Q8NF50 2099 aa9.11□□□□□ -0.95
VPS39-214ENST00000614932 A0A087WV62 115 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 IGKV1-8A0A0C4DH67 115 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 C22orf46C9J442 243 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 K7EQS6 105 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 M0QYG6 137 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 TNFSF13O75888 250 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 WNT11O96014 354 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 GIMD1P0DJR0 217 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 COL9A1P20849 921 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 EDNRAP25101 427 aa9.1□□□□□ -0.95
VPS39-214ENST00000614932 ALDH3B1P43353 468 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms