RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 Q6ZSR3 168 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 SSX6Q7RTT6 188 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 ENTHD1Q8IYW4 607 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 KLHL36Q8N4N3 616 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 ITPKCQ96DU7 683 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 APOL4Q9BPW4 351 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 TTTY10Q9BZA0 68 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 SHARPINQ9H0F6 387 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 PATZ1Q9HBE1 687 aaKnown RBP13.58□□□□□ -0.24
LSM4-206ENST00000600289 G6PC2Q9NQR9 355 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 SNX5Q9Y5X3 404 aa13.58□□□□□ -0.24
LSM4-206ENST00000600289 A8MXK9 166 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 LOC110117498-PIK3R3F6TDL0 507 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 FAM20BO75063 409 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 CYB5R3P00387 301 aaPredicted RBP13.57□□□□□ -0.24
LSM4-206ENST00000600289 PNPP00491 289 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 TTRP02766 147 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 FAM157CP0CG43 387 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 HNF1AP20823 631 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 ATP6V1E1P36543 226 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 GNALP38405 381 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 MAP2K3P46734 347 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 IL5RAQ01344 420 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 MFGE8Q08431 387 aaPredicted RBP13.57□□□□□ -0.24
LSM4-206ENST00000600289 HNRNPA0Q13151 305 aaKnown RBP13.57□□□□□ -0.24
LSM4-206ENST00000600289 RCN1Q15293 331 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 MPPED2Q15777 294 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 ZNF404Q494X3 552 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 FAM120AOSQ5T036 256 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 ELMOD2Q8IZ81 293 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 GALNT4Q8N4A0 578 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 OR10H4Q8NGA5 316 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 OR8S1Q8NH09 359 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 RHOXF1Q8NHV9 184 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 DVL3Q92997 716 aaPredicted RBP13.57□□□□□ -0.24
LSM4-206ENST00000600289 Q96MT0 163 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 C19orf24Q9BVV8 132 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 TLNRD1Q9H1K6 362 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 RNF7Q9UBF6 113 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 EXOGQ9Y2C4 368 aaKnown RBP13.57□□□□□ -0.24
LSM4-206ENST00000600289 POLR3KQ9Y2Y1 108 aaPredicted RBP13.57□□□□□ -0.24
LSM4-206ENST00000600289 RHBDD3Q9Y3P4 386 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 PCDHGB1Q9Y5G3 927 aa13.57□□□□□ -0.24
LSM4-206ENST00000600289 PPIAL4EA0A075B759 164 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 PPIAL4CA0A0B4J2A2 164 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 METTL15A6NJ78 407 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 DHRS7CA6NNS2 312 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 PPIAL4DF5H284 164 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 CASQ2O14958 399 aaPredicted RBP13.56□□□□□ -0.24
LSM4-206ENST00000600289 PLPP2O43688 288 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 PPIAL4FP0DN26 164 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 ZNF85Q03923 595 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 CR1LQ2VPA4 569 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 BCL2L15Q5TBC7 163 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 PLEKHG7Q6ZR37 379 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 RNFT2Q96EX2 444 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 PAPOLGQ9BWT3 736 aaKnown RBP13.56□□□□□ -0.24
LSM4-206ENST00000600289 BEX2Q9BXY8 128 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 TMEM165Q9HC07 324 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 TRIM36Q9NQ86 728 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 GPR84Q9NQS5 396 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 HIF1ANQ9NWT6 349 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 OR52A1Q9UKL2 312 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 PPIAL4AQ9Y536 164 aa13.56□□□□□ -0.24
LSM4-206ENST00000600289 PKD1L1Q8TDX9 2849 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 IGHV3-64DA0A0J9YX35 117 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 ZNF816-ZNF321PA0A0X1KG74 233 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 TMEM210A6NLX4 147 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 ANXA2P2A6NMY6 339 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 CEACAM18A8MTB9 384 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 MAGEB4O15481 346 aaPredicted RBP13.55□□□□□ -0.24
LSM4-206ENST00000600289 FOXH1O75593 365 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 DHRS3O75911 302 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 APOL3O95236 402 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 DBTP11182 482 aaKnown RBP13.55□□□□□ -0.24
LSM4-206ENST00000600289 CCL1P22362 96 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 GATA3P23771 443 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 THBS2P35442 1172 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 ZNF91Q05481 1191 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 PRDX4Q13162 271 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 CDONQ4KMG0 1287 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 FAM76BQ5HYJ3 339 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 LIPNQ5VXI9 398 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 WDR86Q86TI4 376 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 CATSPERDQ86XM0 798 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 EGFL6Q8IUX8 553 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 C11orf53Q8IXP5 236 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 YIPF7Q8N8F6 280 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 ZNF555Q8NEP9 628 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 SEMA6DQ8NFY4 1073 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 OR1M1Q8NGA1 313 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 OR51E1Q8TCB6 317 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 OR5P3Q8WZ94 311 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 TBX5Q99593 518 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 MICU1Q9BPX6 476 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 RTL8AQ9BWD3 113 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 RNPEPL1Q9HAU8 725 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 UFSP2Q9NUQ7 469 aa13.55□□□□□ -0.24
LSM4-206ENST00000600289 MRPS18AQ9NVS2 196 aaKnown RBP13.55□□□□□ -0.24
LSM4-206ENST00000600289 PCDHB10Q9UN67 800 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms