RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 EIF3KQ9UBQ5 218 aaKnown RBP8.09□□□□□ -1.11
TRIM28-208ENST00000597172 CADP27708 2225 aa8.09□□□□□ -1.12
TRIM28-208ENST00000597172 LOC107986453A0A1B0GWG9 222 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 TRDV1A0A1B0GX56 115 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 ATP6V1G2-DDX39BF2Z307 99 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 PIN1P1O15428 100 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 CRYAAP02489 173 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 UBCP0CG48 685 aaKnown RBP8.08□□□□□ -1.12
TRIM28-208ENST00000597172 PSMA1P25786 263 aaKnown RBP8.08□□□□□ -1.12
TRIM28-208ENST00000597172 TTKP33981 857 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 RAD52P43351 418 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 PRSS12P56730 875 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 PPP1CBP62140 327 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 FAM3AP98173 230 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 GK2Q14410 553 aaPredicted RBP8.08□□□□□ -1.12
TRIM28-208ENST00000597172 TRAM1Q15629 374 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 CTF1Q16619 201 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 MSMPQ1L6U9 139 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 GFOD2Q3B7J2 385 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 TMEM255AQ5JRV8 349 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 SPATA46Q5T0L3 261 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 FOXB2Q5VYV0 432 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 TMEM108Q6UXF1 575 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 CEACAM19Q7Z692 300 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 CLVS1Q8IUQ0 354 aaPredicted RBP8.08□□□□□ -1.12
TRIM28-208ENST00000597172 OR1J1Q8NGS3 322 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 SLC25A40Q8TBP6 338 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 GPR148Q8TDV2 347 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 ORAI1Q96D31 301 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 MARS2Q96GW9 593 aaKnown RBP8.08□□□□□ -1.12
TRIM28-208ENST00000597172 CCL19Q99731 98 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 KCNS3Q9BQ31 491 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 CENPOQ9BU64 300 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 GSX2Q9BZM3 304 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 OR2J1Q9GZK6 312 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 COMMD4Q9H0A8 199 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 RNF167Q9H6Y7 350 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 NGBQ9NPG2 151 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 ZNF275Q9NSD4 429 aaPredicted RBP8.08□□□□□ -1.12
TRIM28-208ENST00000597172 PTTG3PQ9NZH4 202 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 ENPP5Q9UJA9 477 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 STUB1Q9UNE7 303 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 V9GYS6 101 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 CR1P17927 2039 aa8.08□□□□□ -1.12
TRIM28-208ENST00000597172 TRBV5-7A0A0A0MS05 114 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 hCG_38984A0A1B0GV85 526 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 A0A1B0GVI7 797 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-208ENST00000597172 A0A1W2PPK0 400 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 LOC390937A0A1W2PQ73 354 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 ANKRD61A6NGH8 418 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 A6NIN4 97 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 SHISA9B4DS77 424 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 ZNF879B4DU55 563 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 RNF223E7ERA6 249 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 J3QW42 95 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 GABRPO00591 440 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 ABCD4O14678 606 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 CASKO14936 926 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 XRCC2O43543 280 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 SYT7O43581 403 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 RGS9O75916 674 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-208ENST00000597172 GABARAPO95166 117 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 PLAUP00749 431 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 HLA-DPB1P04440 258 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 GALP22466 123 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 ACKR3P25106 362 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 FGF9P31371 208 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-208ENST00000597172 TGFBR1P36897 503 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 SOX2P48431 317 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 GSK3AP49840 483 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 LSM3P62310 102 aaKnown RBP8.07□□□□□ -1.12
TRIM28-208ENST00000597172 MALLQ13021 153 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 ALKBH6Q3KRA9 238 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 Q499Y3 187 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 ZMAT1Q5H9K5 638 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 FAM27D1Q5T7N8 215 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 ASPHD2Q6ICH7 369 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 FBXW12Q6X9E4 464 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 DOK3Q7L591 496 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 PIAS4Q8N2W9 510 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-208ENST00000597172 OR5L1Q8NGL2 311 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 LILRB1Q8NHL6 650 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-208ENST00000597172 FGGYQ96C11 551 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 HAVCR1Q96D42 359 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 CMBLQ96DG6 245 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 FAM71F1Q96KD3 344 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-208ENST00000597172 DERL3Q96Q80 235 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 HS3ST6Q96QI5 342 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 OR14A2Q96R54 314 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 CHCHD6Q9BRQ6 235 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 BEX2Q9BXY8 128 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 BCL2L14Q9BZR8 327 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 RGCCQ9H4X1 137 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 ESRP2Q9H6T0 727 aaKnown RBP8.07□□□□□ -1.12
TRIM28-208ENST00000597172 TXNL4BQ9NX01 149 aaKnown RBP8.07□□□□□ -1.12
TRIM28-208ENST00000597172 ZNF391Q9UJN7 358 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 HHLA2Q9UM44 414 aa8.07□□□□□ -1.12
TRIM28-208ENST00000597172 LOC100506127A0A0U1RQW1 187 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 SMIM31A0A1B0GVY4 71 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms