RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 MPV17P39210 176 aa12.58□□□□□ -0.4
VRK3-212ENST00000596814 RORCP51449 518 aa12.58□□□□□ -0.4
VRK3-212ENST00000596814 CLVS2Q5SYC1 327 aa12.58□□□□□ -0.4
VRK3-212ENST00000596814 MBNL2Q5VZF2 373 aaKnown RBP12.58□□□□□ -0.4
VRK3-212ENST00000596814 ADAM5Q6NVV9 412 aa12.58□□□□□ -0.4
VRK3-212ENST00000596814 NR2C2APQ86WQ0 139 aa12.58□□□□□ -0.4
VRK3-212ENST00000596814 NKAIN3Q8N8D7 197 aa12.58□□□□□ -0.4
VRK3-212ENST00000596814 BHLHE23Q8NDY6 225 aa12.58□□□□□ -0.4
VRK3-212ENST00000596814 SLC30A2Q9BRI3 323 aa12.58□□□□□ -0.4
VRK3-212ENST00000596814 PAPOLGQ9BWT3 736 aaKnown RBP12.58□□□□□ -0.4
VRK3-212ENST00000596814 BARHL1Q9BZE3 327 aa12.58□□□□□ -0.4
VRK3-212ENST00000596814 DOPEY1Q5JWR5 2465 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 A0A0G2JK05 382 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 MEGF11A6BM72 1044 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 WIPF3A6NGB9 483 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 CD3EP07766 207 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 ERCC1P07992 297 aaPredicted RBP12.57□□□□□ -0.4
VRK3-212ENST00000596814 OCMP0CE72 109 aaPredicted RBP12.57□□□□□ -0.4
VRK3-212ENST00000596814 RNF224P0DH78 156 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 BDKRB2P30411 391 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 KIR2DL3P43628 341 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 PSG7Q13046 419 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 TMEM42Q69YG0 159 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 SFXN4Q6P4A7 337 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 VHLLQ6RSH7 139 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 DNAAF1Q8NEP3 725 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 UBASH3BQ8TF42 649 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 PIGTQ969N2 578 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 HAVCR1Q96D42 359 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 GFI1Q99684 422 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 TMEM138Q9NPI0 162 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 GPR173Q9NS66 373 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 CRIM1Q9NZV1 1036 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 POU2F3Q9UKI9 436 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 FZR1Q9UM11 496 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 RHBDD3Q9Y3P4 386 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 ATP23Q9Y6H3 246 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 V9GY05 133 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 ANKRD30BLA7E2S9 258 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 NOTOA8MTQ0 251 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 IQCF6A8MYZ5 107 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 C19orf84I3L1E1 186 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 GMDSO60547 372 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 UBR5O95071 2799 aaPredicted RBP12.57□□□□□ -0.4
VRK3-212ENST00000596814 NRASP01111 189 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 ATF1P18846 271 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 FABP6P51161 128 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 PSMD7P51665 324 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 CNN3Q15417 329 aaKnown RBP12.57□□□□□ -0.4
VRK3-212ENST00000596814 UBE2V2Q15819 145 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 DDI2Q5TDH0 399 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 CROCCP3Q8IVE0 287 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 OR5AS1Q8N127 324 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 TMEM171Q8WVE6 324 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 PIGCQ92535 297 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 TECTBQ96PL2 329 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 SLIRPQ9GZT3 109 aaKnown RBP12.57□□□□□ -0.4
VRK3-212ENST00000596814 PLCE1Q9P212 2302 aa12.57□□□□□ -0.4
VRK3-212ENST00000596814 PURGQ9UJV8 347 aaKnown RBP12.57□□□□□ -0.4
VRK3-212ENST00000596814 IGKV1-9A0A0C4DH69 117 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 TIMM8AO60220 97 aaPredicted RBP12.56□□□□□ -0.4
VRK3-212ENST00000596814 ALX3O95076 343 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 CST4P01036 141 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 HCKP08631 526 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 ZNF250P15622 560 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 IGFBP2P18065 325 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 KITLGP21583 273 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 AZGP1P25311 298 aaKnown RBP12.56□□□□□ -0.4
VRK3-212ENST00000596814 PRDX4Q13162 271 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 MSMPQ1L6U9 139 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 TMEM255AQ5JRV8 349 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 PLCXD3Q63HM9 321 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 GLT8D1Q68CQ7 371 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 KRT74Q7RTS7 529 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 SYNPRQ8TBG9 265 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 NPRL2Q8WTW4 380 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 NEK6Q9HC98 313 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 CA10Q9NS85 328 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 MRPL15Q9P015 296 aaKnown RBP12.56□□□□□ -0.4
VRK3-212ENST00000596814 GPR160Q9UJ42 338 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 RNF115Q9Y4L5 304 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 PMF1-BGLAPU3KQ54 211 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 FLNCQ14315 2725 aa12.56□□□□□ -0.4
VRK3-212ENST00000596814 USP9XQ93008 2570 aaPredicted RBP12.56□□□□□ -0.4
VRK3-212ENST00000596814 ZNF850A8MQ14 1090 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 DEFB108AA8MXU0 73 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 SHISA9B4DS77 424 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 AIPO00170 330 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 MAGEB3O15480 346 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 SIAH2O43255 324 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 LILRA1O75019 489 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 PLA2G2AP14555 144 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 ALKBH6Q3KRA9 238 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 ZNF404Q494X3 552 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 DMRTC1Q5HYR2 192 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 IDNKQ5T6J7 187 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 DMRTC2Q8IXT2 367 aaPredicted RBP12.55□□□□□ -0.4
VRK3-212ENST00000596814 ZDHHC23Q8IYP9 409 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 OR52N4Q8NGI2 321 aa12.55□□□□□ -0.4
VRK3-212ENST00000596814 MCFD2Q8NI22 146 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms