RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 ZNF691Q5VV52 312 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 WDR86Q86TI4 376 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 LRRC28Q86X40 367 aaPredicted RBP12.24□□□□□ -0.45
VRK3-206ENST00000594090 ELMOD2Q8IZ81 293 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 SPICQ8N5J4 248 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 OR11L1Q8NGX0 322 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 CYGBQ8WWM9 190 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 ITFG2Q969R8 447 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 LGALS12Q96DT0 336 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 ITPKCQ96DU7 683 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 POM121Q96HA1 1249 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 ACOXLQ9NUZ1 547 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 TMEM160Q9NX00 188 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 UBAP1Q9NZ09 502 aa12.24□□□□□ -0.45
VRK3-206ENST00000594090 ANK3Q12955 4377 aaKnown RBP12.24□□□□□ -0.45
VRK3-206ENST00000594090 NSD1Q96L73 2696 aaPredicted RBP12.24□□□□□ -0.45
VRK3-206ENST00000594090 MALRD1Q5VYJ5 2156 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 DAPL1A0PJW8 107 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 DHRS3O75911 302 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 GRPP07492 148 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 MSMBP08118 114 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 ATP6V1B1P15313 513 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 DVL1P1P54792 670 aaPredicted RBP12.23□□□□□ -0.45
VRK3-206ENST00000594090 ISL1P61371 349 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 PRDX4Q13162 271 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 CDONQ4KMG0 1287 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 TP53I3Q53FA7 332 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 TTC23Q5W5X9 447 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 FAM220AQ7Z4H9 259 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 CATSPERDQ86XM0 798 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 KLHL36Q8N4N3 616 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 DHRSXQ8N5I4 330 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 ACBD7Q8N6N7 88 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 SEMA6DQ8NFY4 1073 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 RORBQ92753 470 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 LPAR2Q9HBW0 351 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 AMBNQ9NP70 447 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 ABCB9Q9NP78 766 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 NKX1-2Q9UD57 310 aaPredicted RBP12.23□□□□□ -0.45
VRK3-206ENST00000594090 GNG8Q9UK08 70 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 SLC22A13Q9Y226 551 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 PCDHGB1Q9Y5G3 927 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 MPC1Q9Y5U8 109 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 TLN2Q9Y4G6 2542 aa12.23□□□□□ -0.45
VRK3-206ENST00000594090 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.22□□□□□ -0.451e-9■■■■■ 27.5
VRK3-206ENST00000594090 ZNF816-ZNF321PA0A0X1KG74 233 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 A6NLC8 198 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 ANXA2P2A6NMY6 339 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 ZNF850A8MQ14 1090 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 WBP4O75554 376 aaKnown RBP12.22□□□□□ -0.45
VRK3-206ENST00000594090 MTRF1O75570 445 aaKnown RBP12.22□□□□□ -0.45
VRK3-206ENST00000594090 ZNF205O95201 554 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 FSTL3O95633 263 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 ADARB1P78563 741 aaKnown RBP12.22□□□□□ -0.45
VRK3-206ENST00000594090 ZNF154Q13106 437 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 FAM201AQ5SY85 155 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 ZBTB37Q5TC79 503 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 KRT74Q7RTS7 529 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 GLCCI1Q86VQ1 547 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 ZDHHC23Q8IYP9 409 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 MUC20Q8N307 709 aaPredicted RBP12.22□□□□□ -0.45
VRK3-206ENST00000594090 OR51F2Q8NH61 342 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 HPSE2Q8WWQ2 592 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 PIGCQ92535 297 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 MICU1Q9BPX6 476 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 ADI1Q9BV57 179 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 RNF7Q9UBF6 113 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 CDC42EP3Q9UKI2 254 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 PCDHB10Q9UN67 800 aa12.22□□□□□ -0.45
VRK3-206ENST00000594090 ZFHX3Q15911 3703 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 PPIAL4EA0A075B759 164 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 A0A1B0GTI1 187 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 CEACAM18A8MTB9 384 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 F5H0A9 414 aaPredicted RBP12.21□□□□□ -0.45
VRK3-206ENST00000594090 PPIAL4DF5H284 164 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 P2RY10O00398 339 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 IGHA1P01876 353 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 PPIAL4FP0DN26 164 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 FAHP16930 419 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 ACTA2P62736 377 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 ACTG2P63267 376 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 CSNK2BP67870 215 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 HOXA4Q00056 320 aaPredicted RBP12.21□□□□□ -0.45
VRK3-206ENST00000594090 SLC34A1Q06495 639 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 RIPPLY1Q0D2K3 151 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 RAB40BQ12829 278 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 SMN1Q16637 294 aaKnown RBP12.21□□□□□ -0.45
VRK3-206ENST00000594090 ZNF404Q494X3 552 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 WDR38Q5JTN6 314 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 Q6ZSR3 168 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 ZNF826PQ6ZT77 177 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 KCTD20Q7Z5Y7 419 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 THAP5Q7Z6K1 395 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 PRSS35Q8N3Z0 413 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 SETD9Q8NE22 299 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 OR1M1Q8NGA1 313 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 CNIH3Q8TBE1 160 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 OR5P3Q8WZ94 311 aa12.21□□□□□ -0.45
VRK3-206ENST00000594090 RNF166Q96A37 237 aaPredicted RBP12.21□□□□□ -0.45
VRK3-206ENST00000594090 TMEM186Q96B77 213 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms