RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 MAGEB3O15480 346 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 AGFG2O95081 481 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 ALDOBP05062 364 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 SERPINA5P05154 406 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 OCMP0CE72 109 aaPredicted RBP9.1□□□□□ -0.95
SS18-217ENST00000580958 PRF1P14222 555 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 CDK2P24941 298 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 HOXC12P31275 282 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 ZNF93P35789 620 aaPredicted RBP9.1□□□□□ -0.95
SS18-217ENST00000580958 PLA2G5P39877 138 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 WNT5AP41221 380 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 IDH3GP51553 393 aaPredicted RBP9.1□□□□□ -0.95
SS18-217ENST00000580958 DEFA1P59665 94 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 DEFA3P59666 94 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 SCN1BQ07699 218 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 KLRB1Q12918 225 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 OXA1LQ15070 435 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 UBE2V2Q15819 145 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 DMRTC1Q5HYR2 192 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 OR10K2Q6IF99 312 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 BEND4Q6ZU67 534 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 BHLHA15Q7RTS1 189 aaPredicted RBP9.1□□□□□ -0.95
SS18-217ENST00000580958 BIVMQ86UB2 503 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 MYPOPQ86VE0 399 aaPredicted RBP9.1□□□□□ -0.95
SS18-217ENST00000580958 PIGTQ969N2 578 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 SPSB4Q96A44 273 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 HAVCR1Q96D42 359 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 S100A16Q96FQ6 103 aaKnown RBP9.1□□□□□ -0.95
SS18-217ENST00000580958 UQCC2Q9BRT2 126 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 SFXN3Q9BWM7 321 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 PRORYQ9H606 182 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 MYEF2Q9P2K5 600 aaKnown RBP9.1□□□□□ -0.95
SS18-217ENST00000580958 SH3BGRL2Q9UJC5 107 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 TBC1D24Q9ULP9 559 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 ZNF835Q9Y2P0 537 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 STARD10Q9Y365 291 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 LDLRAD4O15165 306 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 EEF1E1O43324 174 aaKnown RBP9.09□□□□□ -0.95
SS18-217ENST00000580958 CTAG2O75638 210 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 ALX3O95076 343 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 BPNT1O95861 308 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 NGFP01138 241 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 HLA-DQB1P01920 261 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 ARSBP15848 533 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 SPNP16150 400 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 CBR1P16152 277 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 ZNF14P17017 642 aaPredicted RBP9.09□□□□□ -0.95
SS18-217ENST00000580958 OR3A4PP47883 348 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 DGCR2P98153 550 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 PITPNAQ00169 270 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 RBPJQ06330 500 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 PMPCAQ10713 525 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 MALLQ13021 153 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 P2RY6Q15077 328 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 OR8B8Q15620 311 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 TBC1D28Q2M2D7 210 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 TMEM69Q5SWH9 247 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 LCE2AQ5TA79 106 aaPredicted RBP9.09□□□□□ -0.95
SS18-217ENST00000580958 AWAT2Q6E213 333 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 ZNF474Q6S9Z5 364 aaPredicted RBP9.09□□□□□ -0.95
SS18-217ENST00000580958 RFPL4BQ6ZWI9 263 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 MRPL21Q7Z2W9 205 aaKnown RBP9.09□□□□□ -0.95
SS18-217ENST00000580958 CDH26Q8IXH8 852 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 MINDY2Q8NBR6 621 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 SETD6Q8TBK2 473 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 SSC4DQ8WTU2 575 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 RFT1Q96AA3 541 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 BOD1Q96IK1 185 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 COX4I2Q96KJ9 171 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 GPER1Q99527 375 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 C1QTNF6Q9BXI9 259 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 OR51B6Q9H340 312 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 CDH20Q9HBT6 801 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 RABL2AQ9UBK7 228 aaPredicted RBP9.09□□□□□ -0.95
SS18-217ENST00000580958 TINAGQ9UJW2 476 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 RABL2BQ9UNT1 228 aa9.09□□□□□ -0.95
SS18-217ENST00000580958 MRPS28Q9Y2Q9 187 aaKnown RBP9.09□□□□□ -0.95
SS18-217ENST00000580958 ATRXP46100 2492 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 SPTA1P02549 2419 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 A0A0G2JNJ9 132 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 LANCL1O43813 399 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 SSX4O60224 188 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 KDM4BO94953 1096 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 PTTG1O95997 202 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 IL32P24001 234 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 MNDAP41218 407 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 PTH2RP49190 550 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 INPP1P49441 399 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 CAPZA1P52907 286 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 TAS2R20P59543 309 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 ASAH1Q13510 395 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 GK2Q14410 553 aaPredicted RBP9.08□□□□□ -0.96
SS18-217ENST00000580958 HLXQ14774 488 aaPredicted RBP9.08□□□□□ -0.96
SS18-217ENST00000580958 CNN3Q15417 329 aaKnown RBP9.08□□□□□ -0.96
SS18-217ENST00000580958 CLVS2Q5SYC1 327 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 ZBTB37Q5TC79 503 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 ZNF57Q68EA5 555 aaPredicted RBP9.08□□□□□ -0.96
SS18-217ENST00000580958 TMEM42Q69YG0 159 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 CRIP3Q6Q6R5 217 aa9.08□□□□□ -0.96
SS18-217ENST00000580958 GLIPR1L1Q6UWM5 242 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms