RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 RAB40AQ8WXH6 277 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 FCGR1BQ92637 280 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 APOBEC3DQ96AK3 386 aaPredicted RBP5.6□□□□□ -1.51
VPS53-213ENST00000572334 KCTD12Q96CX2 325 aaKnown RBP5.6□□□□□ -1.51
VPS53-213ENST00000572334 DDOQ99489 341 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 CCDC32Q9BV29 185 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 CDADC1Q9BWV3 514 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 SSBP3Q9BWW4 388 aaPredicted RBP5.6□□□□□ -1.51
VPS53-213ENST00000572334 UNKLQ9H9P5 680 aaKnown RBP5.6□□□□□ -1.51
VPS53-213ENST00000572334 AKIP1Q9NQ31 210 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 MRPL22Q9NWU5 206 aaKnown RBP5.6□□□□□ -1.51
VPS53-213ENST00000572334 GLS2Q9UI32 602 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 B9D1Q9UPM9 204 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 AP3M1Q9Y2T2 418 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 TPRKBQ9Y3C4 175 aa5.6□□□□□ -1.51
VPS53-213ENST00000572334 DNAH3Q8TD57 4116 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 TRAV40A0A0B4J280 105 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 KIR2DS1A0A191URI9 304 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 C22orf46C9J442 243 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 XKRYO14609 159 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 ACOT8O14734 319 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 SURF4O15260 269 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 PTBP3O95758 552 aaKnown RBP5.59□□□□□ -1.51
VPS53-213ENST00000572334 H1F0P07305 194 aaKnown RBP5.59□□□□□ -1.51
VPS53-213ENST00000572334 MMP9P14780 707 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 HIST1H1CP16403 213 aaKnown RBP5.59□□□□□ -1.51
VPS53-213ENST00000572334 ZNF182P17025 639 aaPredicted RBP5.59□□□□□ -1.51
VPS53-213ENST00000572334 RHCEP18577 417 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 MDKP21741 143 aaPredicted RBP5.59□□□□□ -1.51
VPS53-213ENST00000572334 SOX6P35712 828 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 GGT2P36268 569 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 DDOSTP39656 456 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 PSMB10P40306 273 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 CD200P41217 278 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 RGS6P49758 472 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 PSME3P61289 254 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 RELBQ01201 579 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 SRSF4Q08170 494 aaKnown RBP5.59□□□□□ -1.51
VPS53-213ENST00000572334 GK2Q14410 553 aaPredicted RBP5.59□□□□□ -1.51
VPS53-213ENST00000572334 MPPED2Q15777 294 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 DEFB112Q30KQ8 113 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 ESCO2Q56NI9 601 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 WDR25Q64LD2 544 aaPredicted RBP5.59□□□□□ -1.51
VPS53-213ENST00000572334 SLC27A4Q6P1M0 643 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 BRD3OSQ6XYD6 125 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 THAP5Q7Z6K1 395 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 ZBTB46Q86UZ6 589 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 LINC00346Q8IVM7 164 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 MUC20Q8N307 709 aaPredicted RBP5.59□□□□□ -1.51
VPS53-213ENST00000572334 ATG16L2Q8NAA4 619 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 BHLHE23Q8NDY6 225 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 GJC3Q8NFK1 279 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 OR52E2Q8NGJ4 325 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 OR13G1Q8NGZ3 307 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 RHOXF1Q8NHV9 184 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 Q8TCH9 128 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 CYGBQ8WWM9 190 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 RORBQ92753 470 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 TMIGD2Q96BF3 282 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 MAP6Q96JE9 813 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 NMNAT3Q96T66 252 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 MRI1Q9BV20 369 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 HDHD2Q9H0R4 259 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 RERGLQ9H628 205 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 ZMAT3Q9HA38 289 aaKnown RBP5.59□□□□□ -1.51
VPS53-213ENST00000572334 LIN7BQ9HAP6 207 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 DCAF13Q9NV06 445 aaKnown RBP5.59□□□□□ -1.51
VPS53-213ENST00000572334 SCN3BQ9NY72 215 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 CTSZQ9UBR2 303 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 OR5V1Q9UGF6 321 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 CYB5R1Q9UHQ9 305 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 RPS6KA6Q9UK32 745 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 TMEM5Q9Y2B1 443 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 PEX16Q9Y5Y5 336 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 HSPE1-MOB4S4R3N1 261 aa5.59□□□□□ -1.51
VPS53-213ENST00000572334 DHRS12A0PJE2 317 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 OR6C68A6NDL8 312 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 UNC119BA6NIH7 251 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 J3QRK9 145 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 IFNL4K9M1U5 179 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 ARPC3O15145 178 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 HOXA3O43365 443 aaPredicted RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 FAM20BO75063 409 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 GABARAPO95166 117 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 HMGN1P05114 100 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 S100A6P06703 90 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 SFTPBP07988 381 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 RPS2P15880 293 aaKnown RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 OMGP23515 440 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 CPT2P23786 658 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 OPRL1P41146 370 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 RPS27P42677 84 aaKnown RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 PITPNBP48739 271 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 SRP9P49458 86 aaKnown RBP5.58□□□□□ -1.52
VPS53-213ENST00000572334 KRTAP10-3P60369 221 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 FGF12P61328 243 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 GNB2P62879 340 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 IL13RA1P78552 427 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 ATP6AP1Q15904 470 aa5.58□□□□□ -1.52
VPS53-213ENST00000572334 SNAI3Q3KNW1 292 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms