RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 HIST1H2BMQ99879 126 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 CBWD1Q9BRT8 395 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 RSG1Q9BU20 258 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ZBP1Q9H171 429 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ZDHHC6Q9H6R6 413 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 CWH43Q9H720 699 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 UBE2ZQ9H832 354 aaPredicted RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 MEAF6Q9HAF1 191 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 GPN1Q9HCN4 374 aaPredicted RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 TXNRD2Q9NNW7 524 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 OBP2BQ9NPH6 170 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 SEMA4BQ9NPR2 832 aaPredicted RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 RPS10P5Q9NQ39 176 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 SLC17A5Q9NRA2 495 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 TMEM100Q9NV29 134 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 TMEM38BQ9NVV0 291 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 TMEM161AQ9NX61 479 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 MRPL27Q9P0M9 148 aaKnown RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 ONECUT1Q9UBC0 465 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 CACFD1Q9UGQ2 172 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 PSORS1C1Q9UIG5 152 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ZNF391Q9UJN7 358 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 JPT1Q9UK76 154 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 PILRBQ9UKJ0 227 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 FBXW2Q9UKT8 454 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 RASD1Q9Y272 281 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 RAP2CQ9Y3L5 183 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 OR10H1Q9Y4A9 318 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 NME7Q9Y5B8 376 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 SNX10Q9Y5X0 201 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 STRCP1A6NGW2 1772 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 TRPM7Q96QT4 1865 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 RLFQ13129 1914 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 PLXND1Q9Y4D7 1925 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 LY75O60449 1722 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 RICTORQ6R327 1708 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ARID2Q68CP9 1835 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 FXYD6-FXYD2A0A087WZ82 144 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 LOC105369274A0A096LPK9 316 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 hCG_38984A0A1B0GV85 526 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 KANTRA0A1W2PQU2 76 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 IGSF23A1L1A6 192 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 OR6C6A6NF89 314 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 FAM159BA6NKW6 160 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 OR5B21A6NL26 309 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 FAM183AA6NL82 134 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SNRPGP15A8MWD9 76 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 E5RGE8 158 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 G3V4G9 280 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 M0QXV9 152 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 AZIN1O14977 448 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SYT7O43581 403 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 DNPH1O43598 174 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 PCDH7O60245 1069 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 GNG7O60262 68 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SLC25A12O75746 678 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TNFSF13O75888 250 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SIX3O95343 332 aaPredicted RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 CNIH1O95406 144 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 AIFM1O95831 613 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 PTHP01270 115 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 IGHG4P01861 327 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 OR4A8P0C604 315 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SMIM17P0DL12 118 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 AREGP15514 252 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 NPPBP16860 134 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 GOT1P17174 413 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 AKR1C4P17516 323 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 AMD1P17707 334 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 EPORP19235 508 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 OMGP23515 440 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ACP1P24666 158 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 F2RP25116 425 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 PSMA1P25786 263 aaKnown RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 CHATP28329 748 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 HTR1EP28566 365 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 IMPA1P29218 277 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 RBMS1P29558 406 aaKnown RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 AGTR1P30556 359 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SRD5A2P31213 254 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 CCKARP32238 428 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 OPRD1P41143 372 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 BDKRB1P46663 353 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TFPI2P48307 235 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SOX2P48431 317 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 GSK3BP49841 420 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SULT1A1P50225 295 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 UCP2P55851 309 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TAS2R41P59536 307 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TBPL1P62380 186 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 RPL23AP62750 156 aaKnown RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 HMGCS1Q01581 520 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ZNF763Q0D2J5 394 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 TGIF1Q15583 401 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 UBE2V2Q15819 145 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SSX1Q16384 188 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 SNRNP35Q16560 246 aaKnown RBP2.85□□□□□ -1.95
VPS35-208ENST00000568612 TMEM183BQ1AE95 376 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 ARHGAP11BQ3KRB8 267 aa2.85□□□□□ -1.95
VPS35-208ENST00000568612 AMZ1Q400G9 498 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms