RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PTX4Q96A99 478 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 RFT1Q96AA3 541 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 HAVCR1Q96D42 359 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 ADAT3Q96EY9 351 aaPredicted RBP7.77□□□□□ -1.17
VPS39-207ENST00000563692 C14orf79Q96F83 325 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 ZFP3Q96NJ6 502 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 SLC22A4Q9H015 551 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 FAIMQ9NVQ4 179 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 TBCCD1Q9NVR7 557 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 ZNF319Q9P2F9 582 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 PRSS50Q9UI38 385 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 FAM215AQ9Y5M1 114 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 V9GYS6 101 aa7.77□□□□□ -1.17
VPS39-207ENST00000563692 FREM3P0C091 2139 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 NCOA6Q14686 2063 aaPredicted RBP7.76□□□□□ -1.17
VPS39-207ENST00000563692 A0A0B4J203 849 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 A0A0G2JNJ9 132 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 CIB4A0PJX0 185 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 NKX2-6A6NCS4 301 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 METTL21EPA6NDL7 271 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 XRCC2O43543 280 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 TOXO94900 526 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 IL2RAP01589 272 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 HLA-HP01893 362 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 SERPINA5P05154 406 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 HCKP08631 526 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 ITGA5P08648 1049 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 DBHP09172 617 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 STOMP27105 288 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 APLNRP35414 380 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 ZNF93P35789 620 aaPredicted RBP7.76□□□□□ -1.17
VPS39-207ENST00000563692 UBE2NP61088 152 aaKnown RBP7.76□□□□□ -1.17
VPS39-207ENST00000563692 TLE4Q04727 773 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 ASAH1Q13510 395 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 P2RY14Q15391 338 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 TMEM69Q5SWH9 247 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 ZNF57Q68EA5 555 aaPredicted RBP7.76□□□□□ -1.17
VPS39-207ENST00000563692 RTL6Q6ICC9 239 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 FAM166AQ6J272 317 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 ZNF529Q6P280 563 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 Q6ZSR3 168 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 UTS2BQ765I0 119 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 CNEP1R1Q8N9A8 125 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 PNLDC1Q8NA58 520 aaKnown RBP7.76□□□□□ -1.17
VPS39-207ENST00000563692 OR13C9Q8NGT0 318 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 FCAMRQ8WWV6 532 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 SLC7A6Q92536 515 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 BCL2L2Q92843 193 aaPredicted RBP7.76□□□□□ -1.17
VPS39-207ENST00000563692 CPNE2Q96FN4 548 aaPredicted RBP7.76□□□□□ -1.17
VPS39-207ENST00000563692 REEP6Q96HR9 211 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 LURAP1Q96LR2 239 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 C1QTNF5Q9BXJ0 243 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 OCEL1Q9H607 264 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 METTL17Q9H7H0 456 aaPredicted RBP7.76□□□□□ -1.17
VPS39-207ENST00000563692 PLSCR4Q9NRQ2 329 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 RHBDL2Q9NX52 303 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 Q9UFV3 132 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 RAB22AQ9UL26 194 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 PROCRQ9UNN8 238 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 PIGLQ9Y2B2 252 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 CACNA1CQ13936 2221 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 TEX15Q9BXT5 2789 aa7.76□□□□□ -1.17
VPS39-207ENST00000563692 hCG_2014768A0A024R1R8 64 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 A0A0A6YYH2 397 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 A0A1W2PQ09 198 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 A6NIN4 97 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 A6NJ64 397 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 XRCC3O43542 346 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 GSTZ1O43708 216 aaPredicted RBP7.75□□□□□ -1.17
VPS39-207ENST00000563692 LMX1BO60663 402 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 SCGNO76038 276 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 BPNT1O95861 308 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 ECDO95905 644 aaPredicted RBP7.75□□□□□ -1.17
VPS39-207ENST00000563692 HLA-DQB1P01920 261 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 GSTT2BP0CG30 244 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 UBBP0CG47 229 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 RAB6AP20340 208 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 CCNOP22674 350 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 PRKACBP22694 351 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 HOXC12P31275 282 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 MNDAP41218 407 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 POU3F4P49335 361 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 MADCAM1Q13477 382 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 TAB1Q15750 504 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 GSG1Q2KHT4 349 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 ASPHD2Q6ICH7 369 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 TFAP2EQ6VUC0 442 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 Q6ZT83 130 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 GDPD3Q7L5L3 318 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 ANGPTL5Q86XS5 388 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 DMRTC2Q8IXT2 367 aaPredicted RBP7.75□□□□□ -1.17
VPS39-207ENST00000563692 DTX3Q8N9I9 347 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 C9orf106Q8NAJ2 232 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 CPEB3Q8NE35 698 aaKnown RBP7.75□□□□□ -1.17
VPS39-207ENST00000563692 OR52N4Q8NGI2 321 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 OR51A2Q8NGJ7 313 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 OR5L1Q8NGL2 311 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 FGFBP3Q8TAT2 258 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 SLC25A28Q96A46 364 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 APOBEC3DQ96AK3 386 aaPredicted RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms