RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 NCOR1O75376 2440 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 A0A087WZY1 265 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 PEX12O00623 359 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 TRGC1P0CF51 173 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 AFF3P51826 1226 aaKnown RBP11.84□□□□□ -0.51
CLK3-206ENST00000562078 MRPS11P82912 194 aaKnown RBP11.84□□□□□ -0.51
CLK3-206ENST00000562078 MGAT2Q10469 447 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 ELOBQ15370 118 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 AARDQ4LEZ3 155 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 EIF5AL1Q6IS14 154 aaKnown RBP11.84□□□□□ -0.51
CLK3-206ENST00000562078 ZNF619Q8N2I2 560 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 CDRT4Q8N9R6 151 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 DNASE2BQ8WZ79 361 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 GNRHR2Q96P88 292 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 NMES1Q9C002 83 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 KCNJ16Q9NPI9 418 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 KLK13Q9UKR3 277 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 TMED3Q9Y3Q3 217 aa11.84□□□□□ -0.51
CLK3-206ENST00000562078 CCDC163A0A0D9SF12 145 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 CYB5BO43169 146 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 HIST1H1CP16403 213 aaKnown RBP11.83□□□□□ -0.52
CLK3-206ENST00000562078 HTR2CP28335 458 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 TDGF1P3P51864 188 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 ERVFRD-1P60508 538 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 ADAM8P78325 824 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 SSBP1Q04837 148 aaKnown RBP11.83□□□□□ -0.52
CLK3-206ENST00000562078 ZNF616Q08AN1 781 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 DUSP8Q13202 625 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 EIPR1Q53HC9 387 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 ARHGEF39Q8N4T4 335 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 OR6K6Q8NGW6 343 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 M1APQ8TC57 530 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 RPS4Y2Q8TD47 263 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 ABHD5Q8WTS1 349 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 NPRL2Q8WTW4 380 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 AQP10Q96PS8 301 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 TNFRSF13CQ96RJ3 184 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 SLC25A31Q9H0C2 315 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 SLC2A8Q9NY64 477 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 A0A1B0GV50 99 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 ZNF705GA8MUZ8 300 aaPredicted RBP11.83□□□□□ -0.52
CLK3-206ENST00000562078 FAM171A2A8MVW0 826 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 EIF1AYO14602 144 aaKnown RBP11.83□□□□□ -0.52
CLK3-206ENST00000562078 ATXN8OSP0DMR3 200 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 CAPZBP47756 277 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 EIF1AXP47813 144 aaKnown RBP11.83□□□□□ -0.52
CLK3-206ENST00000562078 FHITP49789 147 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 ZNF136P52737 540 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 JOSD1Q15040 202 aaPredicted RBP11.83□□□□□ -0.52
CLK3-206ENST00000562078 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.83□□□□□ -0.52
CLK3-206ENST00000562078 MRPL2Q5T653 305 aaKnown RBP11.83□□□□□ -0.52
CLK3-206ENST00000562078 LYSMD4Q5XG99 296 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 OR5AK2Q8NH90 309 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 FRZBQ92765 325 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 ULBP3Q9BZM4 244 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 CBLN4Q9NTU7 201 aa11.83□□□□□ -0.52
CLK3-206ENST00000562078 EFSO43281 561 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 CDC40O60508 579 aaKnown RBP eCLIP11.82□□□□□ -0.52
CLK3-206ENST00000562078 RAC2P15153 192 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 S1PR1P21453 382 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 RPS4Y1P22090 263 aaKnown RBP11.82□□□□□ -0.52
CLK3-206ENST00000562078 GABRA3P34903 492 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 RP1P56715 2156 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 EIF5AP63241 154 aaKnown RBP11.82□□□□□ -0.52
CLK3-206ENST00000562078 TRA2AQ13595 282 aaKnown RBP eCLIP11.82□□□□□ -0.52
CLK3-206ENST00000562078 CACNA1CQ13936 2221 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 DMRTA1Q5VZB9 504 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 PRSS54Q6PEW0 395 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 WDR5BQ86VZ2 330 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 C1orf210Q8IVY1 113 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 OR52R1Q8NGF1 315 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 TMEM106AQ96A25 262 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 CCDC74AQ96AQ1 378 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 FAM3DQ96BQ1 224 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 GAL3ST4Q96RP7 486 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 ZDBF2Q9HCK1 2354 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 ASCL3Q9NQ33 180 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 FRRS1LQ9P0K9 344 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 ZNF346Q9UL40 294 aaKnown RBP11.82□□□□□ -0.52
CLK3-206ENST00000562078 MRPS18CQ9Y3D5 142 aaKnown RBP11.82□□□□□ -0.52
CLK3-206ENST00000562078 MED19A0JLT2 244 aaPredicted RBP11.82□□□□□ -0.52
CLK3-206ENST00000562078 M0R296 226 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 ZNF354AO60765 605 aaPredicted RBP11.82□□□□□ -0.52
CLK3-206ENST00000562078 ZNF432O94892 652 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 DUS4LO95620 317 aaKnown RBP11.82□□□□□ -0.52
CLK3-206ENST00000562078 CSTBP04080 98 aaKnown RBP11.82□□□□□ -0.52
CLK3-206ENST00000562078 DBIP07108 87 aaKnown RBP11.82□□□□□ -0.52
CLK3-206ENST00000562078 NID1P14543 1247 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 FASLGP48023 281 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 PRTGQ2VWP7 1150 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 TMEM268Q5VZI3 342 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 ZAR1Q86SH2 424 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 METTL27Q8N6F8 245 aaPredicted RBP11.82□□□□□ -0.52
CLK3-206ENST00000562078 CTHRC1Q96CG8 243 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 STACQ99469 402 aa11.82□□□□□ -0.52
CLK3-206ENST00000562078 FITM1A5D6W6 292 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 TGFBR3LH3BV60 316 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 MSX1P28360 303 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 CX3CR1P49238 355 aa11.81□□□□□ -0.52
CLK3-206ENST00000562078 GFERP55789 205 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms