RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 TMEM14AQ9Y6G1 99 aa13.07□□□□□ -0.32
VPS39-203ENST00000561797 IGHV3OR15-7A0A075B7D8 119 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 A0A0A6YYJ9 748 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 TRAV38-1A0A0B4J264 116 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 TMEM269A0A1B0GVZ9 245 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 OOEPA6NGQ2 149 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 ANXA2P2A6NMY6 339 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 ZNF850A8MQ14 1090 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 FSHBP01225 129 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 EGR1P18146 543 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 CSNK2BP67870 215 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 EFNB1P98172 346 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 PAX2Q02962 417 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 PRDX4Q13162 271 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 KPNB1Q14974 876 aaKnown RBP13.06□□□□□ -0.32
VPS39-203ENST00000561797 KCNJ8Q15842 424 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 SNCBQ16143 134 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 AADACL4Q5VUY2 407 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 WDR25Q64LD2 544 aaPredicted RBP13.06□□□□□ -0.32
VPS39-203ENST00000561797 BTNL3Q6UXE8 466 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 COMMD2Q86X83 199 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 C11orf53Q8IXP5 236 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 SLC35F2Q8IXU6 374 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 ZNF679Q8IYX0 411 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 FTMTQ8N4E7 242 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 GCSAMQ8N6F7 178 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 OR1M1Q8NGA1 313 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 LRRC29Q8WV35 223 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 RAB40AQ8WXH6 277 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 ASB17Q8WXJ9 295 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 PPP1R14AQ96A00 147 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 TECTBQ96PL2 329 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 OR8B4Q96RC9 309 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 MICU1Q9BPX6 476 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 RASSF4Q9H2L5 321 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 FAM206AQ9NX38 181 aa13.06□□□□□ -0.32
VPS39-203ENST00000561797 IGHV2-70DA0A0C4DH43 119 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 SLC22A31A6NKX4 558 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 MAGEB4O15481 346 aaPredicted RBP13.05□□□□□ -0.32
VPS39-203ENST00000561797 ADAM20O43506 726 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 GYPAP02724 150 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 FPR2P25090 351 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 PSMB10P40306 273 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 RIDAP52758 137 aaKnown RBP13.05□□□□□ -0.32
VPS39-203ENST00000561797 CXCR4P61073 352 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 IL5RAQ01344 420 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 PAX8Q06710 450 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 KLF17Q5JT82 389 aaPredicted RBP13.05□□□□□ -0.32
VPS39-203ENST00000561797 DEGS2Q6QHC5 323 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 ZNF841Q6ZN19 808 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.05□□□□□ -0.32
VPS39-203ENST00000561797 SEMA6DQ8NFY4 1073 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 FAM81AQ8TBF8 368 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 ITPKCQ96DU7 683 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 PKP2Q99959 881 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 APOL4Q9BPW4 351 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 NUDT16L1Q9BRJ7 211 aaKnown RBP13.05□□□□□ -0.32
VPS39-203ENST00000561797 RTL8AQ9BWD3 113 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 SUCNR1Q9BXA5 334 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 OSBPL10Q9BXB5 764 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 PBOV1Q9GZY1 135 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 ADGRL4Q9HBW9 690 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 ERVK-18Q9QC07 812 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 CTSZQ9UBR2 303 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 GTF2A1LQ9UNN4 478 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 MPC1Q9Y5U8 109 aa13.05□□□□□ -0.32
VPS39-203ENST00000561797 IGHV3OR16-10A0A075B7F0 116 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 ZNF670-ZNF695F2Z2N8 137 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 CDIPTO14735 213 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 PHYHO14832 338 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 ZNF254O75437 659 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 LHBP01229 141 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 MAP2K3P46734 347 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 HILS1P60008 231 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 ACTR3P61158 418 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 ROM1Q03395 351 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 MFGE8Q08431 387 aaPredicted RBP13.04□□□□□ -0.32
VPS39-203ENST00000561797 ZNF322Q6U7Q0 402 aaPredicted RBP13.04□□□□□ -0.32
VPS39-203ENST00000561797 WDR82Q6UXN9 313 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 KCTD8Q6ZWB6 473 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 FAM90A1Q86YD7 464 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 GID4Q8IVV7 300 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 GALNT4Q8N4A0 578 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 OR51G2Q8NGK0 314 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 OR51E1Q8TCB6 317 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 RNF170Q96K19 258 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 FAM71F1Q96KD3 344 aaPredicted RBP13.04□□□□□ -0.32
VPS39-203ENST00000561797 TBX5Q99593 518 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 RBM4BQ9BQ04 359 aaKnown RBP13.04□□□□□ -0.32
VPS39-203ENST00000561797 RNPEPL1Q9HAU8 725 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 TRIM36Q9NQ86 728 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 ZNF69Q9UC07 566 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 ZNF391Q9UJN7 358 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 NUP50Q9UKX7 468 aa13.04□□□□□ -0.32
VPS39-203ENST00000561797 KIR2DS1A0A191URI9 304 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 ACOD1A6NK06 481 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 TNFRSF13BO14836 293 aaPredicted RBP13.03□□□□□ -0.32
VPS39-203ENST00000561797 CST4P01036 141 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 DCTDP32321 178 aa13.03□□□□□ -0.32
VPS39-203ENST00000561797 GMFBP60983 142 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms