RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TMEM236Q5W0B7 351 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 C16orf87Q6PH81 154 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 DUX4L9Q6RFH8 374 aaPredicted RBP8.47□□□□□ -1.05
LDLR-214ENST00000560628 SHISA2Q6UWI4 295 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 BTN2A1Q7KYR7 527 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 SPATA24Q86W54 205 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 CPOQ8IVL8 374 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 BBS1Q8NFJ9 593 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 OR1M1Q8NGA1 313 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 OR5T2Q8NGG2 359 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 OR52H1Q8NGJ2 320 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 ST8SIA4Q92187 359 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 WDFY2Q96P53 400 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 TBX15Q96SF7 602 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 CCL13Q99616 98 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 PAPOLGQ9BWT3 736 aaKnown RBP8.47□□□□□ -1.05
LDLR-214ENST00000560628 ZMAT3Q9HA38 289 aaKnown RBP8.47□□□□□ -1.05
LDLR-214ENST00000560628 ZNF556Q9HAH1 456 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 TRIM36Q9NQ86 728 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 DUX4Q9UBX2 424 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 KLHDC2Q9Y2U9 406 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 TENM1Q9UKZ4 2725 aa8.46□□□□□ -1.05
LDLR-214ENST00000560628 CENPVL3A0A0U1RRI6 287 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 AQP12BA6NM10 295 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 ZNF850A8MQ14 1090 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 P2RY10O00398 339 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 CDIPTO14735 213 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 HMGN1P05114 100 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 LYNP07948 512 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 OSMP13725 252 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 MMP9P14780 707 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 MDKP21741 143 aaPredicted RBP8.46□□□□□ -1.06
LDLR-214ENST00000560628 CFL1P23528 166 aaKnown RBP8.46□□□□□ -1.06
LDLR-214ENST00000560628 GNALP38405 381 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 NAA10P41227 235 aaPredicted RBP8.46□□□□□ -1.06
LDLR-214ENST00000560628 RPS7P62081 194 aaKnown RBP8.46□□□□□ -1.06
LDLR-214ENST00000560628 IL13RA1P78552 427 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 CDK5Q00535 292 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 GK3PQ14409 553 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 MICBQ29980 383 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 TEX36Q5VZQ5 186 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 WDR82Q6UXN9 313 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 AQP12AQ8IXF9 295 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 PDZD9Q8IXQ8 264 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 PNLDC1Q8NA58 520 aaKnown RBP8.46□□□□□ -1.06
LDLR-214ENST00000560628 OTOSQ8NHW6 89 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 PIGCQ92535 297 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 RPL3LQ92901 407 aaKnown RBP8.46□□□□□ -1.06
LDLR-214ENST00000560628 LHX4Q969G2 390 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 TMIGD2Q96BF3 282 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 MICU1Q9BPX6 476 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 C1orf21Q9H246 121 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 CNTD2Q9H8S5 307 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 RNPEPL1Q9HAU8 725 aa8.46□□□□□ -1.06
LDLR-214ENST00000560628 ARRDC5A6NEK1 342 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 FAM181BA6NEQ2 426 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 SRRM5B3KS81 715 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.45□□□□□ -1.06
LDLR-214ENST00000560628 PSMD9O00233 223 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 GYG2O15488 501 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 TFF1P04155 84 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 ACKR3P25106 362 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 BPIFB3P59826 476 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 CBX1P83916 185 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 PRB3Q04118 309 aaPredicted RBP8.45□□□□□ -1.06
LDLR-214ENST00000560628 PRDX4Q13162 271 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 IKZF1Q13422 519 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 WDR38Q5JTN6 314 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 METTL11BQ5VVY1 283 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 FIP1L1Q6UN15 594 aaKnown RBP8.45□□□□□ -1.06
LDLR-214ENST00000560628 Q6YL49 198 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 KCTD8Q6ZWB6 473 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 RHOUQ7L0Q8 258 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 GALNT4Q8N4A0 578 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 FAM216BQ8N7L0 139 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 ZNF454Q8N9F8 522 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 CSNK2A3Q8NEV1 391 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 GATAD2BQ8WXI9 593 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 RNF170Q96K19 258 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 LYZL4Q96KX0 146 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 SIRPDQ9H106 197 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 PRDM13Q9H4Q3 707 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 SNTG1Q9NSN8 517 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 TVP23BQ9NYZ1 205 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 KIF17Q9P2E2 1029 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 KAAG1Q9UBP8 84 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 DNAJB11Q9UBS4 358 aa8.45□□□□□ -1.06
LDLR-214ENST00000560628 IGHV1-69DA0A0B4J2H0 117 aa8.44□□□□□ -1.06
LDLR-214ENST00000560628 ANXA2P2A6NMY6 339 aa8.44□□□□□ -1.06
LDLR-214ENST00000560628 POM121CA8CG34 1229 aa8.44□□□□□ -1.06
LDLR-214ENST00000560628 FKBP6O75344 327 aa8.44□□□□□ -1.06
LDLR-214ENST00000560628 TIPRLO75663 272 aa8.44□□□□□ -1.06
LDLR-214ENST00000560628 ECDO95905 644 aaPredicted RBP8.44□□□□□ -1.06
LDLR-214ENST00000560628 IGHV1-69P01742 117 aa8.44□□□□□ -1.06
LDLR-214ENST00000560628 CRYBA1P05813 215 aa8.44□□□□□ -1.06
LDLR-214ENST00000560628 MELTFP08582 738 aa8.44□□□□□ -1.06
LDLR-214ENST00000560628 ANXA8P13928 327 aa8.44□□□□□ -1.06
LDLR-214ENST00000560628 SELLP14151 372 aa8.44□□□□□ -1.06
LDLR-214ENST00000560628 MUC1P15941 1255 aaPredicted RBP8.44□□□□□ -1.06
LDLR-214ENST00000560628 AMY2BP19961 511 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms