RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 RAB25P57735 213 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 ADORA2A-AS1P86434 159 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 TAGLNQ01995 201 aaKnown RBP9.71□□□□□ -0.86
USP3-218ENST00000560202 ZNF92Q03936 586 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 TLE1Q04724 770 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 IKZF1Q13422 519 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 TAB1Q15750 504 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 LRRTM1Q86UE6 522 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 SERPINA12Q8IW75 414 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 GALNT11Q8NCW6 608 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 AKAP1Q92667 903 aaKnown RBP eCLIP9.71□□□□□ -0.86
USP3-218ENST00000560202 SPSB4Q96A44 273 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 WDFY2Q96P53 400 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 SLC22A4Q9H015 551 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 PLEKHA1Q9HB21 404 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 CDH20Q9HBT6 801 aa9.71□□□□□ -0.86
USP3-218ENST00000560202 TMA7Q9Y2S6 64 aaKnown RBP9.71□□□□□ -0.86
USP3-218ENST00000560202 MAS1P04201 325 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 CECR9P0C854 216 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 ZNF20P17024 532 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 ADRA2CP18825 462 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 CFL1P23528 166 aaKnown RBP9.7□□□□□ -0.86
USP3-218ENST00000560202 CCKARP32238 428 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 GNALP38405 381 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 OR3A3P47888 321 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 FAM3AP98173 230 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 MALLQ13021 153 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 TNK1Q13470 666 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 ASAH1Q13510 395 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 PPA1Q15181 289 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 IGFBP7Q16270 282 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 SLC25A35Q3KQZ1 300 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 ESCO2Q56NI9 601 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 SFXN4Q6P4A7 337 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 ZNF101Q8IZC7 436 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 OR5D14Q8NGL3 314 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 PRR7Q8TB68 274 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 AP3S1Q92572 193 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 CCDC120Q96HB5 630 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 GFI1Q99684 422 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 OR10A4Q9H209 315 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 ZCCHC4Q9H5U6 513 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 EIF3KQ9UBQ5 218 aaKnown RBP9.7□□□□□ -0.86
USP3-218ENST00000560202 STARD10Q9Y365 291 aa9.7□□□□□ -0.86
USP3-218ENST00000560202 IGSF10Q6WRI0 2623 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 IGHV1-18A0A0C4DH31 117 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 hCG_38984A0A1B0GV85 526 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 DHRS7CA6NNS2 312 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 J3QW42 95 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 BET1O15155 118 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 EPXP11678 715 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 GNLYP22749 145 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 GSK3AP49840 483 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 ASCL1P50553 236 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 PPP3R1P63098 170 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 SCN1BQ07699 218 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 IDNKQ5T6J7 187 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 ALKBH2Q6NS38 261 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 CELF2-AS1Q8N7Q2 184 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 SEMA6DQ8NFY4 1073 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 OR51A2Q8NGJ7 313 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 OR5L1Q8NGL2 311 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 C10orf35Q96D05 121 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 BBC3Q96PG8 261 aaPredicted RBP9.69□□□□□ -0.86
USP3-218ENST00000560202 AIFM2Q9BRQ8 373 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 OR51B6Q9H340 312 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 ERRFI1Q9UJM3 462 aaPredicted RBP9.69□□□□□ -0.86
USP3-218ENST00000560202 PIGLQ9Y2B2 252 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 V9GY05 133 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 POLEQ07864 2286 aa9.69□□□□□ -0.86
USP3-218ENST00000560202 MEIOCA2RUB1 952 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 ZSCAN5BA6NJL1 495 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 ANXA2P2A6NMY6 339 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 FAM90A27PA6NNH2 459 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 SMPD2O60906 423 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 ZNF35P13682 527 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 FAHP16930 419 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 RAB3AP20336 220 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 ACKR3P25106 362 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 THBS4P35443 961 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 MAP2K3P46734 347 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 UQCRFS1P47985 274 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 ZNF83P51522 516 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 PRSS12P56730 875 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 GK2Q14410 553 aaPredicted RBP9.68□□□□□ -0.86
USP3-218ENST00000560202 CARTPTQ16568 116 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 C3orf36Q3SXR2 165 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 ZNF529Q6P280 563 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 C22orf34Q6ZV56 151 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 PGAP1Q75T13 922 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 DNAAF1Q8NEP3 725 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 OR1M1Q8NGA1 313 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 REPIN1Q9BWE0 567 aaKnown RBP9.68□□□□□ -0.86
USP3-218ENST00000560202 POFUT1Q9H488 388 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 SMURF1Q9HCE7 757 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 PTTG3PQ9NZH4 202 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 SPEF1Q9Y4P9 236 aa9.68□□□□□ -0.86
USP3-218ENST00000560202 MEGF11A6BM72 1044 aa9.67□□□□□ -0.86
USP3-218ENST00000560202 IFITM5A6NNB3 132 aa9.67□□□□□ -0.86
USP3-218ENST00000560202 M0R1B8 84 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms