RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ABHD12BQ7Z5M8 362 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-231ENST00000557433 ZC3H10Q96K80 434 aaKnown RBP14.39□□□□□ -0.11
SHMT2-231ENST00000557433 ARL5BQ96KC2 179 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 OR10C1Q96KK4 312 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 TUBA4BQ9H853 241 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 OR2S2Q9NQN1 319 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 SUSD2Q9UGT4 822 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 CYP8B1Q9UNU6 501 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 POLR1DQ9Y2S0 133 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 F5P12259 2224 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 IFNA2P01563 188 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 IGHG1P01857 330 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 RBMXP38159 391 aaKnown RBP14.38□□□□□ -0.11
SHMT2-231ENST00000557433 LPAR6P43657 344 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 OR3A4PP47883 348 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 P2RY4P51582 365 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 GRB2P62993 217 aaKnown RBP14.38□□□□□ -0.11
SHMT2-231ENST00000557433 CSNK2A1P68400 391 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-231ENST00000557433 SLC25A53Q5H9E4 307 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 CCDC54Q8NEL0 328 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 CSNK2A3Q8NEV1 391 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 NOXO1Q8NFA2 376 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 ARHGAP5-AS1Q96IT6 56 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 MRGPRX4Q96LA9 322 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 SULT4A1Q9BR01 284 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 PLEKHA2Q9HB19 425 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 PPP4R1LQ9P1A2 415 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 TIMM10BQ9Y5J6 103 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 LHFPL6Q9Y693 200 aa14.38□□□□□ -0.11
SHMT2-231ENST00000557433 ALPK2Q86TB3 2170 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 C1orf196B1AJZ1 125 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 RRP8O43159 456 aaKnown RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 CRTAPO75718 401 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 RAD51DO75771 328 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 PTAFRP25105 342 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 PMELP40967 661 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 CLRN1P58418 232 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 RNF4P78317 190 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 GABREP78334 506 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 ECH1Q13011 328 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 RPL7L1Q6DKI1 246 aaKnown RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 COMMD2Q86X83 199 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 UEVLDQ8IX04 471 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 OR8B12Q8NGG6 310 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 LMX1AQ8TE12 382 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 ROBO4Q8WZ75 1007 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 MRPL38Q96DV4 380 aaKnown RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 KIRREL1Q96J84 757 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 GPER1Q99527 375 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 CMSS1Q9BQ75 279 aaKnown RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 TCEAL7Q9BRU2 100 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 VN1R1Q9GZP7 353 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 GPR84Q9NQS5 396 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 DHCR7Q9UBM7 475 aaKnown RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 TUBD1Q9UJT1 453 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 FAM96BQ9Y3D0 163 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 PCDHGA1Q9Y5H4 931 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 A0A1B0GX78 115 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 FOXI3A8MTJ6 420 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 K7EPK0 472 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 ZNF354AO60765 605 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 F12P00748 615 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 IFNA21P01568 189 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 RPL12P30050 165 aaKnown RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 SNU13P55769 128 aaKnown RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 S100A10P60903 97 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 OGFOD3Q6PK18 319 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 FAM71E2Q8N5Q1 922 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 SNIP1Q8TAD8 396 aaKnown RBP14.37□□□□□ -0.11
SHMT2-231ENST00000557433 WNT2BQ93097 391 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 TM2D1Q9BX74 207 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 EHFQ9NZC4 300 aa14.37□□□□□ -0.11
SHMT2-231ENST00000557433 FAM157AC9JC47 383 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 S100A9P06702 114 aaKnown RBP14.36□□□□□ -0.11
SHMT2-231ENST00000557433 NR2C1P13056 603 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 CTSSP25774 331 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 KCNJ3P48549 501 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 EFNA3P52797 238 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 ZNF121P58317 390 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-231ENST00000557433 CHRFAM7AQ494W8 412 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 SLC25A47Q6Q0C1 308 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 WDFY1Q8IWB7 410 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 UBAC2Q8NBM4 344 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 OR51T1Q8NGJ9 327 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 OR51F2Q8NH61 342 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 FNDC9Q8TBE3 224 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 RNF138Q8WVD3 245 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 BANF2Q9H503 90 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 SDHAF3Q9NRP4 125 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 FAM212BQ9NTI7 297 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-231ENST00000557433 B3GAT1Q9P2W7 334 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 CD207Q9UJ71 328 aa14.36□□□□□ -0.11
SHMT2-231ENST00000557433 DEDDO75618 318 aa14.35□□□□□ -0.11
SHMT2-231ENST00000557433 MT-ND4LP03901 98 aa14.35□□□□□ -0.11
SHMT2-231ENST00000557433 CTSDP07339 412 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-231ENST00000557433 PGA4P0DJD7 388 aa14.35□□□□□ -0.11
SHMT2-231ENST00000557433 PGA3P0DJD8 388 aa14.35□□□□□ -0.11
SHMT2-231ENST00000557433 NAT2P11245 290 aa14.35□□□□□ -0.11
SHMT2-231ENST00000557433 FOSL2P15408 326 aa14.35□□□□□ -0.11
SHMT2-231ENST00000557433 ZNF708P17019 499 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms