RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 FAHP16930 419 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 TNFRSF1AP19438 455 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 GIFP27352 417 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 NR4A2P43354 598 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 MAP2K3P46734 347 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 SRP9P49458 86 aaKnown RBP14.79□□□□□ -0.04
SHMT2-225ENST00000556798 MAB21L1Q13394 359 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 RIN1Q13671 783 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 HFEQ30201 348 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 MOGAT3Q86VF5 341 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 RDH10Q8IZV5 341 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 STX19Q8N4C7 294 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 KLHL36Q8N4N3 616 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 ZNF540Q8NDQ6 660 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 SEMA6DQ8NFY4 1073 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 ZNF420Q8TAQ5 688 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-225ENST00000556798 SGCDQ92629 289 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 MYCBPQ99417 103 aaPredicted RBP14.79□□□□□ -0.04
SHMT2-225ENST00000556798 DLL4Q9NR61 685 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 FKBP14Q9NWM8 211 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 FRRS1LQ9P0K9 344 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 PIGLQ9Y2B2 252 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 ZANQ9Y493 2812 aa14.79□□□□□ -0.04
SHMT2-225ENST00000556798 ABCA2Q9BZC7 2435 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 A0A096LNT2 108 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 A0A1B0GVI7 797 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 LOC107986453A0A1B0GWG9 222 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 A6NIN4 97 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 ZNF850A8MQ14 1090 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 PPIHO43447 177 aaKnown RBP14.78□□□□□ -0.04
SHMT2-225ENST00000556798 GMDSO60547 372 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 C21orf33P30042 268 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-225ENST00000556798 GNALP38405 381 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 CD200P41217 278 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 GPR6P46095 362 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-225ENST00000556798 PRDX4Q13162 271 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 AVPI1Q5T686 147 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 FDX2Q6P4F2 183 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 DOK3Q7L591 496 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 FTMTQ8N4E7 242 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 PLPP7Q8NBV4 271 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 OR14K1Q8NGZ2 314 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 OR8S1Q8NH09 359 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 PIGCQ92535 297 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 COX4I2Q96KJ9 171 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 NARFLQ9H6Q4 476 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 GCM1Q9NP62 436 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 PAK1IP1Q9NWT1 392 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-225ENST00000556798 PPP1R3CQ9UQK1 317 aa14.78□□□□□ -0.04
SHMT2-225ENST00000556798 CAB39Q9Y376 341 aaPredicted RBP14.78□□□□□ -0.04
SHMT2-225ENST00000556798 NOP16Q9Y3C1 178 aaKnown RBP14.78□□□□□ -0.04
SHMT2-225ENST00000556798 IGHV4-61A0A0C4DH41 118 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-225ENST00000556798 ZNF816-ZNF321PA0A0X1KG74 233 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 LOC100289279A0A1B0GTE1 492 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 CLDN25C9JDP6 229 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 PTGES3LE9PB15 166 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 SYT7O43581 403 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 LMX1BO60663 402 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 MTRF1O75570 445 aaKnown RBP14.77□□□□□ -0.05
SHMT2-225ENST00000556798 CST4P01036 141 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 UBCP0CG48 685 aaKnown RBP14.77□□□□□ -0.05
SHMT2-225ENST00000556798 ATP6V1B1P15313 513 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 CCL1P22362 96 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 GTF2A1P52655 376 aaPredicted RBP14.77□□□□□ -0.05
SHMT2-225ENST00000556798 RIPPLY1Q0D2K3 151 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 ALKBH1Q13686 389 aaKnown RBP14.77□□□□□ -0.05
SHMT2-225ENST00000556798 MPPED2Q15777 294 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 DMRTC1Q5HYR2 192 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 XAF1Q6GPH4 301 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 TMPRSS11AQ6ZMR5 421 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 C18orf12Q96KH6 178 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 TMEM106BQ9NUM4 274 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 UFSP2Q9NUQ7 469 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 CHCHD3Q9NX63 227 aaKnown RBP14.77□□□□□ -0.05
SHMT2-225ENST00000556798 SCN3BQ9NY72 215 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 V9GYS6 101 aa14.77□□□□□ -0.05
SHMT2-225ENST00000556798 TEP1Q99973 2627 aaKnown RBP14.76□□□□□ -0.05
SHMT2-225ENST00000556798 OR4C45A6NMZ5 311 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 WNT9BO14905 357 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 GRPP07492 148 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 GBX2P52951 348 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-225ENST00000556798 MED21Q13503 144 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 CEP78Q5JTW2 689 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 WDR86Q86TI4 376 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 KLBQ86Z14 1044 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 ZDHHC23Q8IYP9 409 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 OR10AC1Q8NH08 325 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 HPSE2Q8WWQ2 592 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 GATAD2BQ8WXI9 593 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 ITPKCQ96DU7 683 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 SMR3AQ99954 134 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 FGF23Q9GZV9 251 aaPredicted RBP14.76□□□□□ -0.05
SHMT2-225ENST00000556798 ENPP5Q9UJA9 477 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 MPC1Q9Y5U8 109 aa14.76□□□□□ -0.05
SHMT2-225ENST00000556798 LRP5LA4QPB2 252 aa14.75□□□□□ -0.05
SHMT2-225ENST00000556798 ANXA2P2A6NMY6 339 aa14.75□□□□□ -0.05
SHMT2-225ENST00000556798 MYL12BO14950 172 aa14.75□□□□□ -0.05
SHMT2-225ENST00000556798 CYB5R3P00387 301 aaPredicted RBP14.75□□□□□ -0.05
SHMT2-225ENST00000556798 LALBAP00709 142 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms