RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PDZD11Q5EBL8 140 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 LDLRAD2Q5SZI1 272 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 MFSD14CQ5VZR4 134 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 ACMSDQ8TDX5 336 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 RBPMSQ93062 196 aaKnown RBP1.22□□□□□ -2.21
SCFD1-216ENST00000555550 FBXO32Q969P5 355 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 METTL7AQ9H8H3 244 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 BEX1Q9HBH7 125 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 OR2S2Q9NQN1 319 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 MTCH1Q9NZJ7 389 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 SLC17A4Q9Y2C5 497 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 LOXHD1Q8IVV2 1947 aa1.22□□□□□ -2.21
SCFD1-216ENST00000555550 SLC9A3R1O14745 358 aaPredicted RBP1.21□□□□□ -2.22
SCFD1-216ENST00000555550 CTAG2O75638 210 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 KCNK2O95069 426 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 PGA4P0DJD7 388 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 PGA3P0DJD8 388 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 LRRC74AQ0VAA2 488 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 GCSAMLQ5JQS6 135 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 ZNF678Q5SXM1 525 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 ZNF420Q8TAQ5 688 aaPredicted RBP1.21□□□□□ -2.22
SCFD1-216ENST00000555550 YIPF5Q969M3 257 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 EMC6Q9BV81 110 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 PKIBQ9C010 78 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 VSIRQ9H7M9 311 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 PITPNC1Q9UKF7 332 aa1.21□□□□□ -2.22
SCFD1-216ENST00000555550 SYNJ2BP-COX16A0A087WUM0 186 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 TRBV9A0A0B4J1U6 114 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 HEATR9A2RTY3 570 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 IZUMO1RA6ND01 250 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 M0R3G1 203 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 ZNF73O43830 326 aaPredicted RBP1.2□□□□□ -2.22
SCFD1-216ENST00000555550 SNX4O95219 450 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 LCA5LO95447 670 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 IGHMP01871 453 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 HBE1P02100 147 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 CTSGP08311 255 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 RAB4AP20338 218 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 PRPS1L1P21108 318 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 PPICP45877 212 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 OR12D2P58182 307 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 BEX3Q00994 111 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 ZNF181Q2M3W8 571 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 TCF24Q7RTU0 167 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 HORMAD1Q86X24 394 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 OR13C2Q8NGS9 318 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 S100PBPQ96BU1 408 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 SGTBQ96EQ0 304 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 UQCC2Q9BRT2 126 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 PLEKHF2Q9H8W4 249 aa1.2□□□□□ -2.22
SCFD1-216ENST00000555550 KMT2BQ9UMN6 2715 aaPredicted RBP1.2□□□□□ -2.22
SCFD1-216ENST00000555550 LOC102724200A0A096LPH7 203 aaPredicted RBP1.19□□□□□ -2.22
SCFD1-216ENST00000555550 NME4O00746 187 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 EIF3HO15372 352 aaKnown RBP eCLIP1.19□□□□□ -2.22
SCFD1-216ENST00000555550 MYL2P10916 166 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 SFTPCP11686 197 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 ACTR3P61158 418 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 GBE1Q04446 702 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 C2orf54Q08AI8 447 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 CUL2Q13617 745 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 KRTAP25-1Q3LHN0 102 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 C6orf99Q4VX62 202 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 XKR7Q5GH72 579 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 HHATQ5VTY9 493 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 FAM104BQ5XKR9 115 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 SSH2Q76I76 1423 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 PDPNQ86YL7 162 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 OR4D6Q8NGJ1 314 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 OR9G4Q8NGQ1 327 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 ELMO1Q92556 727 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 YIPF6Q96EC8 236 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 TEAD3Q99594 435 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 MS4A8Q9BY19 250 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 ACTR3CQ9C0K3 210 aaPredicted RBP1.19□□□□□ -2.22
SCFD1-216ENST00000555550 TMEM165Q9HC07 324 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 RBFOX1Q9NWB1 397 aaKnown RBP1.19□□□□□ -2.22
SCFD1-216ENST00000555550 CES1P1Q9UKY3 287 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 HPCAL4Q9UM19 191 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 CAB39Q9Y376 341 aaPredicted RBP1.19□□□□□ -2.22
SCFD1-216ENST00000555550 RRP15Q9Y3B9 282 aaKnown RBP1.19□□□□□ -2.22
SCFD1-216ENST00000555550 VWA8A3KMH1 1905 aa1.19□□□□□ -2.22
SCFD1-216ENST00000555550 A0A0A6YYD5 115 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 IGKV1-6A0A0C4DH72 117 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 OXTP01178 125 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 IGKV1-39P01597 117 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 TRBV12-3P01733 135 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 IGKV1D-39P04432 117 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 CSRP1P21291 193 aaKnown RBP1.18□□□□□ -2.22
SCFD1-216ENST00000555550 MYCNOSP40205 109 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 ATP5IP56385 69 aaPredicted RBP1.18□□□□□ -2.22
SCFD1-216ENST00000555550 KDSRQ06136 332 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 KRTAP21-3Q3LHN1 58 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 LGALSLQ3ZCW2 172 aaPredicted RBP1.18□□□□□ -2.22
SCFD1-216ENST00000555550 FA2HQ7L5A8 372 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 FAM228AQ86W67 206 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 LRRC8AQ8IWT6 810 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 OR8K3Q8NH51 312 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 SLC38A4Q969I6 547 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 DYNLL2Q96FJ2 89 aa1.18□□□□□ -2.22
SCFD1-216ENST00000555550 MYCBPQ99417 103 aaPredicted RBP1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms