RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 RAB3BP20337 219 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 NKX6-1P78426 367 aaPredicted RBP9.23□□□□□ -0.93
TDP1-211ENST00000555178 OR8B8Q15620 311 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 OR2T2Q6IF00 324 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 PAMR1Q6UXH9 720 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 Q6ZSR3 168 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 MRPL21Q7Z2W9 205 aaKnown RBP9.23□□□□□ -0.93
TDP1-211ENST00000555178 OR5AS1Q8N127 324 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 SEMA6DQ8NFY4 1073 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 GPR173Q9NS66 373 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 EIF3KQ9UBQ5 218 aaKnown RBP9.23□□□□□ -0.93
TDP1-211ENST00000555178 CGGBP1Q9UFW8 167 aaPredicted RBP9.23□□□□□ -0.93
TDP1-211ENST00000555178 NDRG3Q9UGV2 375 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 RHBDD3Q9Y3P4 386 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 RAF1P04049 648 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 PPP3CBP16298 524 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 ATF1P18846 271 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 FSTP19883 344 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 THBS4P35443 961 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 FABP6P51161 128 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 CLDN12P56749 244 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 MALLQ13021 153 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 SNTB2Q13425 540 aaKnown RBP9.23□□□□□ -0.93
TDP1-211ENST00000555178 UBE2V2Q15819 145 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 HES5Q5TA89 166 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 SFXN4Q6P4A7 337 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 SERPINA12Q8IW75 414 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 OR52N4Q8NGI2 321 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 AKAP1Q92667 903 aaKnown RBP eCLIP9.23□□□□□ -0.93
TDP1-211ENST00000555178 MARS2Q96GW9 593 aaKnown RBP9.23□□□□□ -0.93
TDP1-211ENST00000555178 DACH2Q96NX9 599 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 KCNK15Q9H427 330 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 RGCCQ9H4X1 137 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 SP140LQ9H930 580 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 CCDC59Q9P031 241 aaKnown RBP9.23□□□□□ -0.93
TDP1-211ENST00000555178 DAPK2Q9UIK4 370 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 GPR160Q9UJ42 338 aa9.23□□□□□ -0.93
TDP1-211ENST00000555178 ABCA12Q86UK0 2595 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 HECTD1Q9ULT8 2610 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 MAP1AP78559 2803 aaPredicted RBP9.22□□□□□ -0.93
TDP1-211ENST00000555178 ASH1LQ9NR48 2969 aaKnown RBP9.22□□□□□ -0.93
TDP1-211ENST00000555178 POLQO75417 2590 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 E7EQL1 145 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 CRYAAP02489 173 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 DDOSTP39656 456 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 SLC22A25Q6T423 547 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 TRMT10AQ8TBZ6 339 aaKnown RBP9.22□□□□□ -0.93
TDP1-211ENST00000555178 KLF14Q8TD94 323 aaPredicted RBP9.22□□□□□ -0.93
TDP1-211ENST00000555178 TMEM171Q8WVE6 324 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 PHYHIPQ92561 330 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 PIGTQ969N2 578 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 CMBLQ96DG6 245 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 DSCAMO60469 2012 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 VPS13CQ709C8 3753 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 SPG11Q96JI7 2443 aa9.22□□□□□ -0.93
TDP1-211ENST00000555178 LOC390937A0A1W2PQ73 354 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 GGT3PA6NGU5 568 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 CD300LBA8K4G0 201 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 MTRF1O75570 445 aaKnown RBP9.21□□□□□ -0.93
TDP1-211ENST00000555178 PAHP00439 452 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 PTAFRP25105 342 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 THBS2P35442 1172 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 RORCP51449 518 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 RIPPLY1Q0D2K3 151 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 PSG7Q13046 419 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 C3orf36Q3SXR2 165 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 IDNKQ5T6J7 187 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 ZNF529Q6P280 563 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 CRIP3Q6Q6R5 217 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 TMEM108Q6UXF1 575 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 OR1M1Q8NGA1 313 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 UBASH3BQ8TF42 649 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 RFT1Q96AA3 541 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 CHST5Q9GZS9 411 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 C6orf62Q9GZU0 229 aaPredicted RBP9.21□□□□□ -0.93
TDP1-211ENST00000555178 FGF23Q9GZV9 251 aaPredicted RBP9.21□□□□□ -0.93
TDP1-211ENST00000555178 ZCCHC4Q9H5U6 513 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 CKLFQ9UBR5 152 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 APCP25054 2843 aa9.21□□□□□ -0.93
TDP1-211ENST00000555178 ANXA2P2A6NMY6 339 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 ZNF850A8MQ14 1090 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 C3orf80F5H4A9 247 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 SULT1B1O43704 296 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 MAP2K3P46734 347 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 BMXP51813 675 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 PPP3R1P63098 170 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 DGUOKQ16854 277 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 SP5Q6BEB4 398 aaPredicted RBP9.21□□□□□ -0.94
TDP1-211ENST00000555178 FBXW12Q6X9E4 464 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 MCFD2Q8NI22 146 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 PIGCQ92535 297 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 LRRC46Q96FV0 321 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 SYT3Q9BQG1 590 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 PAPOLGQ9BWT3 736 aaKnown RBP9.21□□□□□ -0.94
TDP1-211ENST00000555178 ZNF391Q9UJN7 358 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 FOXJ3Q9UPW0 622 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 ATP23Q9Y6H3 246 aa9.21□□□□□ -0.94
TDP1-211ENST00000555178 CTDSP2O14595 271 aa9.2□□□□□ -0.94
TDP1-211ENST00000555178 GMDSO60547 372 aa9.2□□□□□ -0.94
TDP1-211ENST00000555178 SNRPBP14678 240 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms