RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 TRAV6A0A075B6T7 132 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 A0A0B4J203 849 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 LOC107986453A0A1B0GWG9 222 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 GGT3PA6NGU5 568 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 A8MV72 311 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-216ENST00000554975 AHRRA9YTQ3 701 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 ZNF878C9JN71 531 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 PHF1O43189 567 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-216ENST00000554975 DNPH1O43598 174 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 CBR3O75828 277 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 RBBP9O75884 186 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 VAMP5O95183 116 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 MAS1P04201 325 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 IL5P05113 134 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 ADRA2CP18825 462 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 RAB6AP20340 208 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 CDK2P24941 298 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 CTSSP25774 331 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 PTH2RP49190 550 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 MMP16P51512 607 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 ZMYND11Q15326 602 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 RNASE12Q5GAN4 147 aaKnown RBP9.72□□□□□ -0.85
SHMT2-216ENST00000554975 TMEM225Q6GV28 225 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 PLXDC2Q6UX71 529 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 DNM1P46Q6ZS02 220 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 CREB3L2Q70SY1 520 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 SYT9Q86SS6 491 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 WDSUB1Q8N9V3 476 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 C9orf106Q8NAJ2 232 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 CCDC54Q8NEL0 328 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 OR13C3Q8NGS6 347 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 OR52I2Q8NH67 350 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 RNF133Q8WVZ7 376 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 SLC25A44Q96H78 314 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-216ENST00000554975 MED30Q96HR3 178 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 RADILQ96JH8 1075 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 OXGR1Q96P68 337 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 SORCS2Q96PQ0 1159 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 HS3ST6Q96QI5 342 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 KLHDC3Q9BQ90 382 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 RBM24Q9BX46 236 aaKnown RBP9.72□□□□□ -0.85
SHMT2-216ENST00000554975 C1orf198Q9H425 327 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 HRASLSQ9HDD0 168 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 MED11Q9P086 117 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 OR52A1Q9UKL2 312 aa9.72□□□□□ -0.85
SHMT2-216ENST00000554975 COA3Q9Y2R0 106 aaPredicted RBP9.72□□□□□ -0.85
SHMT2-216ENST00000554975 TRAV8-7A0A075B6U6 113 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 A0A0A6YYJ9 748 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 UBE2QL1A1L167 161 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 MBD3L3A6NE82 208 aaPredicted RBP9.71□□□□□ -0.86
SHMT2-216ENST00000554975 GJE1A6NN92 205 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 C17orf51A8MQB3 221 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 SNRPGP15A8MWD9 76 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 MS4A18H0YCH9 400 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 H7C417 338 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 SSNA1O43805 119 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 CREBL2O60519 120 aaPredicted RBP9.71□□□□□ -0.86
SHMT2-216ENST00000554975 EIF1BO60739 113 aaKnown RBP9.71□□□□□ -0.86
SHMT2-216ENST00000554975 PMS2P2O95744 297 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 AKAIN1P0CW23 69 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 CPN1P15169 458 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 IGFBP3P17936 291 aaPredicted RBP9.71□□□□□ -0.86
SHMT2-216ENST00000554975 HTR2CP28335 458 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 LAP3P28838 519 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 HSD11B1P28845 292 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 RCVRNP35243 200 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 POU3F4P49335 361 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 MECP2P51608 486 aaKnown RBP9.71□□□□□ -0.86
SHMT2-216ENST00000554975 IFITM2Q01629 132 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 SRYQ05066 204 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 DBPQ10586 325 aaPredicted RBP9.71□□□□□ -0.86
SHMT2-216ENST00000554975 GSG1Q2KHT4 349 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 MS4A18Q3C1V0 323 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 KRTAP24-1Q3LI83 254 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 NSUN5P2Q63ZY6 315 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 DCXRQ7Z4W1 244 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 GLCCI1Q86VQ1 547 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 GTPBP8Q8N3Z3 284 aaPredicted RBP9.71□□□□□ -0.86
SHMT2-216ENST00000554975 OR2AJ1Q8NGZ0 328 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 OR6X1Q8NH79 312 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 MBD3L2Q8NHZ7 208 aaPredicted RBP9.71□□□□□ -0.86
SHMT2-216ENST00000554975 ST7LQ8TDW4 575 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 FAM3DQ96BQ1 224 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 ZNF524Q96C55 264 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 SFXN2Q96NB2 322 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 TRIB1Q96RU8 372 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 AMELYQ99218 206 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 NUDT16L1Q9BRJ7 211 aaKnown RBP9.71□□□□□ -0.86
SHMT2-216ENST00000554975 GSX2Q9BZM3 304 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 PRDM14Q9GZV8 571 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 MTFP1Q9UDX5 166 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 SCP2D1Q9UJQ7 156 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 FBXL2Q9UKC9 423 aa9.71□□□□□ -0.86
SHMT2-216ENST00000554975 SVEP1Q4LDE5 3571 aa9.7□□□□□ -0.86
SHMT2-216ENST00000554975 MEIKINA0A087WXM9 373 aa9.7□□□□□ -0.86
SHMT2-216ENST00000554975 LOC390937A0A1W2PQ73 354 aa9.7□□□□□ -0.86
SHMT2-216ENST00000554975 METTL21EPA6NDL7 271 aa9.7□□□□□ -0.86
SHMT2-216ENST00000554975 AQP7P3A6NL99 342 aa9.7□□□□□ -0.86
SHMT2-216ENST00000554975 H3BML4 177 aa9.7□□□□□ -0.86
SHMT2-216ENST00000554975 TRAF3IP2O43734 574 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms