RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TWSG1Q9GZX9 223 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 ST3GAL6Q9Y274 331 aa13.95□□□□□ -0.18
CUX1-211ENST00000546411 FNDC1Q4ZHG4 1894 aaPredicted RBP13.94□□□□□ -0.18
CUX1-211ENST00000546411 ARGFXA6NJG6 315 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 LIPT2A6NK58 231 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 IFNA2P01563 188 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 SPATA46Q5T0L3 261 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 RNF141Q8WVD5 230 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 DOCK7Q96N67 2140 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 IL5P05113 134 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 MRGPREQ86SM8 312 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 CDH26Q8IXH8 852 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 KCNRGQ8N5I3 272 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 TMEM229BQ8NBD8 167 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 OR8B12Q8NGG6 310 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 ASB10Q8WXI3 467 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 ST8SIA2Q92186 375 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 BCO1Q9HAY6 547 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 DUSP13Q9UII6 198 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 TIMM10BQ9Y5J6 103 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 CD300LBA8K4G0 201 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 SOCS1O15524 211 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 CCL3P10147 92 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 IL2RGP31785 369 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 FCGR2CP31995 323 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 GALNSP34059 522 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 IDH3GP51553 393 aaPredicted RBP13.94□□□□□ -0.18
CUX1-211ENST00000546411 ZNF529Q6P280 563 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 TMEM88Q6PEY1 159 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 TRILQ7L0X0 811 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 SLC25A38Q96DW6 304 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 DNAJB11Q9UBS4 358 aa13.94□□□□□ -0.18
CUX1-211ENST00000546411 PI4KAP42356 2102 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 HSD17B6O14756 317 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 RAC2P15153 192 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 GLRA1P23415 457 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 EGR4Q05215 589 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 AADACL3Q5VUY0 350 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 RTL6Q6ICC9 239 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 OR52H1Q8NGJ2 320 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 TCEAL3Q969E4 200 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 LRRC46Q96FV0 321 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 SULT4A1Q9BR01 284 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 P4HTMQ9NXG6 502 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 GLS2Q9UI32 602 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 SULT1C2O00338 296 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 ADAP1O75689 374 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 CD63P08962 238 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 ADRA2CP18825 462 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 FOXK1P85037 733 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 HLXQ14774 488 aaPredicted RBP13.93□□□□□ -0.18
CUX1-211ENST00000546411 AANATQ16613 207 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 ZNF626Q68DY1 528 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 PLPP5Q8NEB5 264 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 ADAT3Q96EY9 351 aaPredicted RBP13.93□□□□□ -0.18
CUX1-211ENST00000546411 MED30Q96HR3 178 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 MESP1Q9BRJ9 268 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 PBDC1Q9BVG4 233 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 PCED1AQ9H1Q7 454 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 GHITMQ9H3K2 345 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 MRPS18BQ9Y676 258 aaKnown RBP13.93□□□□□ -0.18
CUX1-211ENST00000546411 IGHV5-10-1A0A0J9YXX1 117 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 B8ZZF3 427 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 RAG2P55895 527 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 LPCAT3Q6P1A2 487 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 DHRS13Q6UX07 377 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 SLC26A10Q8NG04 563 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 OR9K2Q8NGE7 335 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 MARC2Q969Z3 335 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 ELF5Q9UKW6 265 aaPredicted RBP13.93□□□□□ -0.18
CUX1-211ENST00000546411 PUS1Q9Y606 427 aaKnown RBP eCLIP13.93□□□□□ -0.18
CUX1-211ENST00000546411 BDP1A6H8Y1 2624 aa13.93□□□□□ -0.18
CUX1-211ENST00000546411 D6RAR5 112 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 YKT6O15498 198 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 UPK3AO75631 287 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 FAM157BP0CG42 384 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 SULT1A3P0DMM9 295 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 SULT1A4P0DMN0 295 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 HOXD11P31277 338 aaPredicted RBP13.92□□□□□ -0.18
CUX1-211ENST00000546411 HAAOP46952 286 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 DSCR4P56555 118 aaPredicted RBP13.92□□□□□ -0.18
CUX1-211ENST00000546411 ISXQ2M1V0 245 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 LINC01590Q5TEZ4 76 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 TMEM200AQ86VY9 491 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 SVBPQ8N300 66 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 CMTM3Q96MX0 182 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 C20orf24Q9BUV8 137 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 UFSP2Q9NUQ7 469 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 NECAP2Q9NVZ3 263 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 FLVCR1Q9Y5Y0 555 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 A0A1W2PP11 408 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 ZNF32P17041 273 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 FKBP2P26885 142 aaKnown RBP13.92□□□□□ -0.18
CUX1-211ENST00000546411 GCH1P30793 250 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 ZBTB44Q8NCP5 570 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 SEH1LQ96EE3 360 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 FOXB1Q99853 325 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 FAAP24Q9BTP7 215 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 RALGAPA1Q6GYQ0 2036 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 OR2F2O95006 317 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms