RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PNMA8CA0A1B0GUJ8 204 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 H3BSH0 61 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 GMDSO60547 372 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 CST4P01036 141 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 ADH4P08319 380 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 CA6P23280 308 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 PCGF3Q3KNV8 242 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 UBE2UQ5VVX9 321 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 KRT74Q7RTS7 529 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 C10orf35Q96D05 121 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 TRMT61AQ96FX7 289 aaKnown RBP14.58□□□□□ -0.08
LIG1-204ENST00000542460 PGLYRP3Q96LB9 341 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 TPK1Q9H3S4 243 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 PLEKHA1Q9HB21 404 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 ZNF701Q9NV72 531 aaPredicted RBP14.58□□□□□ -0.08
LIG1-204ENST00000542460 NKIRAS2Q9NYR9 191 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 ENPP5Q9UJA9 477 aa14.58□□□□□ -0.08
LIG1-204ENST00000542460 NOP16Q9Y3C1 178 aaKnown RBP14.58□□□□□ -0.08
LIG1-204ENST00000542460 SPRY3O43610 288 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 IGHV1-46P01743 117 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 PAX1P15863 534 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 FAHP16930 419 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 GNALP38405 381 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 TPBGQ13641 420 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 YIF1BQ5BJH7 314 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 FAM209AQ5JX71 171 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 CDH24Q86UP0 819 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 OR2Z1Q8NG97 314 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 OR51A4Q8NGJ6 313 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 OR13C3Q8NGS6 347 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 OR10AC1Q8NH08 325 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 GPR148Q8TDV2 347 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 UFD1Q92890 307 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 MBD6Q96DN6 1003 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 OPALINQ96PE5 141 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 PAPOLGQ9BWT3 736 aaKnown RBP14.57□□□□□ -0.08
LIG1-204ENST00000542460 BEX4Q9NWD9 120 aaPredicted RBP14.57□□□□□ -0.08
LIG1-204ENST00000542460 MPC1Q9Y5U8 109 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 SPG11Q96JI7 2443 aa14.57□□□□□ -0.08
LIG1-204ENST00000542460 MLNRO43193 412 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 HLA-DPB1P04440 258 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 TNFSF4P23510 183 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 OR8G1Q15617 311 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 LIPKQ5VXJ0 399 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 KCTD8Q6ZWB6 473 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 SPERTQ8NA61 448 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 NEU4Q8WWR8 484 aaPredicted RBP14.56□□□□□ -0.08
LIG1-204ENST00000542460 PIGCQ92535 297 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 RGP1Q92546 391 aaPredicted RBP14.56□□□□□ -0.08
LIG1-204ENST00000542460 ELMOD3Q96FG2 381 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 SORCS2Q96PQ0 1159 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 ABCB9Q9NP78 766 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 ZNF275Q9NSD4 429 aaPredicted RBP14.56□□□□□ -0.08
LIG1-204ENST00000542460 DHDHQ9UQ10 334 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 DSCAMO60469 2012 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 AKAP6Q13023 2319 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 ZNF850A8MQ14 1090 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 H0YL77 283 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 CD55P08174 381 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 CPEP16870 476 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 MAGEB1P43366 347 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 PRDX4Q13162 271 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 TSTQ16762 297 aaKnown RBP14.56□□□□□ -0.08
LIG1-204ENST00000542460 DEFB113Q30KQ7 82 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 ARMCX4Q5H9R4 360 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 CLVS2Q5SYC1 327 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 TMEM42Q69YG0 159 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 MS4A15Q8N5U1 240 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 OR10AD1Q8NGE0 317 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 TSEN15Q8WW01 171 aaKnown RBP14.56□□□□□ -0.08
LIG1-204ENST00000542460 FGGYQ96C11 551 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 ADAT1Q9BUB4 502 aaKnown RBP14.56□□□□□ -0.08
LIG1-204ENST00000542460 GSX2Q9BZM3 304 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 EGLN1Q9GZT9 426 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 VCX3AQ9NNX9 186 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 DECR2Q9NUI1 292 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 IL19Q9UHD0 177 aa14.56□□□□□ -0.08
LIG1-204ENST00000542460 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.55□□□□□ -0.08
LIG1-204ENST00000542460 A6NIN4 97 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 ANXA2P2A6NMY6 339 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 LMX1BO60663 402 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 F12P00748 615 aaPredicted RBP14.55□□□□□ -0.08
LIG1-204ENST00000542460 SERPINA3P01011 423 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 OCM2P0CE71 109 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 ZNF20P17024 532 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 EFNA4P52798 201 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 CCL8P80075 99 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 TNFAIP6P98066 277 aaPredicted RBP14.55□□□□□ -0.08
LIG1-204ENST00000542460 NEDD8Q15843 81 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 OR8S1Q8NH09 359 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 PP6455Q8WZ26 134 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 HIST1H2AAQ96QV6 131 aa14.55□□□□□ -0.08
LIG1-204ENST00000542460 POLQO75417 2590 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 MAGEA13PA6NCF6 341 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 TRIM64CA6NLI5 447 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 F5H5P2 479 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 TPD52L2O43399 206 aaKnown RBP14.54□□□□□ -0.08
LIG1-204ENST00000542460 INMTO95050 263 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 NRASP01111 189 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 CD2P06729 351 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms