RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 NOS1APO75052 506 aaPredicted RBP12.06□□□□□ -0.48
RTN3-210ENST00000540798 TRAPPC6AO75865 159 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 FIP1L1Q6UN15 594 aaKnown RBP12.06□□□□□ -0.48
RTN3-210ENST00000540798 ZNF600Q6ZNG1 722 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 OR2T35Q8NGX2 323 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 KCNG3Q8TAE7 436 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 PP6455Q8WZ26 134 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 SPTSSAQ969W0 71 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 SPACA5Q96QH8 159 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 CHST5Q9GZS9 411 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 CRLF2Q9HC73 371 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 UPB1Q9UBR1 384 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 IGKV3D-15A0A087WSY6 115 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 OR6C6A6NF89 314 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 M0QYG6 137 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 NUPL2O15504 423 aaKnown RBP12.06□□□□□ -0.48
RTN3-210ENST00000540798 SSX5O60225 188 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 IKZF1Q13422 519 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 MEF2DQ14814 521 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 DRAM2Q6UX65 266 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 AAED1Q7RTV5 226 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 TRAPPC6BQ86SZ2 158 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 ZNF584Q8IVC4 421 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 TMEM104Q8NE00 496 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 NKD1Q969G9 470 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 NICN1Q9BSH3 213 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 PLEK2Q9NYT0 353 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 DHRS7CA6NNS2 312 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 FOXI3A8MTJ6 420 aaPredicted RBP12.06□□□□□ -0.48
RTN3-210ENST00000540798 DBHP09172 617 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 CASRP41180 1078 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 LHX2P50458 406 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 PER3P56645 1201 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 RAP2BP61225 183 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 MUC20Q8N307 709 aaPredicted RBP12.06□□□□□ -0.48
RTN3-210ENST00000540798 FAM89BQ8N5H3 189 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 GALNT11Q8NCW6 608 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 OR13C8Q8NGS7 320 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 ZNF775Q96BV0 537 aaPredicted RBP12.06□□□□□ -0.48
RTN3-210ENST00000540798 SLC6A7Q99884 636 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 CHST6Q9GZX3 395 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 TMEM9BQ9NQ34 198 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 GHRLQ9UBU3 117 aa12.06□□□□□ -0.48
RTN3-210ENST00000540798 F10P00742 488 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 AP2S1P53680 142 aaPredicted RBP12.05□□□□□ -0.48
RTN3-210ENST00000540798 UBE2V2Q15819 145 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 GFOD2Q3B7J2 385 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 HES3Q5TGS1 186 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 ABHD17BQ5VST6 288 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 OR52H1Q8NGJ2 320 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 TMPRSS13Q9BYE2 586 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 I3L521 148 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 SGCEO43556 437 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 AMY2AP04746 511 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 FCER2P06734 321 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 HCKP08631 526 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 GSTP1P09211 210 aaKnown RBP12.05□□□□□ -0.48
RTN3-210ENST00000540798 GNB3P16520 340 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 HYAL4Q2M3T9 481 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 SNAI3Q3KNW1 292 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 PLAC9Q5JTB6 97 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 DHRS13Q6UX07 377 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 SLC16A14Q7RTX9 510 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 RTN4RL2Q86UN3 420 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 MRGPRFQ96AM1 343 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 SGK3Q96BR1 496 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 ZNF845Q96IR2 970 aaPredicted RBP12.05□□□□□ -0.48
RTN3-210ENST00000540798 IP6K3Q96PC2 410 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 POFUT1Q9H488 388 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 EXO5Q9H790 373 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.05□□□□□ -0.48
RTN3-210ENST00000540798 KCNK7Q9Y2U2 307 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 GPR179Q6PRD1 2367 aa12.05□□□□□ -0.48
RTN3-210ENST00000540798 UBE2QL1A1L167 161 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 RLN1P04808 185 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 TBPP20226 339 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 SLC6A9P48067 706 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 CLDN18P56856 261 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 POLR2GP62487 172 aaKnown RBP eCLIP12.04□□□□□ -0.48
RTN3-210ENST00000540798 HGFACQ04756 655 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 AIMP2Q13155 320 aaKnown RBP12.04□□□□□ -0.48
RTN3-210ENST00000540798 KISS1Q15726 138 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 MPPED2Q15777 294 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 FAM189A2Q15884 450 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 C2orf68Q2NKX9 166 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 NRN1LQ496H8 165 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 PDSS1Q5T2R2 415 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 ZNF101Q8IZC7 436 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 BPIFB2Q8N4F0 458 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 OR2AK2Q8NG84 335 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 OR4S1Q8NGB4 309 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 OR1F12Q8NHA8 337 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 OR10A2Q9H208 303 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 GPR35Q9HC97 309 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 ZC4H2Q9NQZ6 224 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 TMEM82A0PJX8 343 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 TSC22D2O75157 780 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 TMEM50BP56557 158 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 SCRN3Q0VDG4 424 aa12.04□□□□□ -0.48
RTN3-210ENST00000540798 ATPAF1Q5TC12 328 aaPredicted RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms