RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 GPR84Q9NQS5 396 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 LANCL2Q9NS86 450 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 B3GALT5Q9Y2C3 310 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 SPTY2D1-AS1A0A0U1RR47 76 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 A6NLC8 198 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 ITGA3P26006 1051 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 CAPZBP47756 277 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 DVL1P1P54792 670 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-237ENST00000539504 DCAF7P61962 342 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 TSC22D1Q15714 1073 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 FAM209BQ5JX69 171 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 ZNF283Q8N7M2 679 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 OR6S1Q8NH40 331 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 FNDC9Q8TBE3 224 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 WWTR1Q9GZV5 400 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 FBXL17Q9UF56 701 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 RHBDD3Q9Y3P4 386 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 MS4A18H0YCH9 400 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 NPIPB7O75200 414 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 IFNA21P01568 189 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 S100A8P05109 93 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 BLVRBP30043 206 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-237ENST00000539504 CDAP32320 146 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 BLKP51451 505 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 P2RY4P51582 365 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 OR2B8PP59922 312 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 SUPT4H1P63272 117 aaKnown RBP9.97□□□□□ -0.81
SYNE1-237ENST00000539504 MS4A18Q3C1V0 323 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 TMPRSS9Q7Z410 1059 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 LYPD6Q86Y78 171 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 DEFB119Q8N690 84 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 HIST1H2BAQ96A08 127 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 SPACA1Q9HBV2 294 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 DNAJB11Q9UBS4 358 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 KPTNQ9Y664 436 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 IGHV3-20A0A0C4DH32 117 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 MFNGO00587 321 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 TAAR5O14804 337 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 TMEM50BP56557 158 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 FOXL2P58012 376 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 CLRN1P58418 232 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 AWAT1Q58HT5 328 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 VAX1Q5SQQ9 334 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 FAM57BQ71RH2 274 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 Q7L0L9 218 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 WDFY1Q8IWB7 410 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 C15orf54Q8N8G6 183 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 LMX1AQ8TE12 382 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 KLHDC7BQ96G42 594 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 RTBDNQ9BSG5 229 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-237ENST00000539504 OR10A2Q9H208 303 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 AMDHD2Q9Y303 409 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 MMACHCQ9Y4U1 282 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 PTPRSQ13332 1948 aa9.97□□□□□ -0.81
SYNE1-237ENST00000539504 A0A1W2PPH5 198 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 TSPAN2O60636 221 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 CST4P01036 141 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 IGKV3-11P04433 115 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 CD37P11049 281 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 NQO2P16083 231 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 SERPINA2P20848 420 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 SLC6A9P48067 706 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 FOXK1P85037 733 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 PNLDC1Q8NA58 520 aaKnown RBP9.96□□□□□ -0.81
SYNE1-237ENST00000539504 POC1AQ8NBT0 407 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 OR9K2Q8NGE7 335 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 LRRC61Q9BV99 259 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 TMEM106CQ9BVX2 250 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 MTIF3Q9H2K0 278 aaKnown RBP9.96□□□□□ -0.81
SYNE1-237ENST00000539504 SUSD2Q9UGT4 822 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 hCG_1809904A0A1W2PP81 198 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 A0A1W2PR64 198 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 A0A1W2PRV1 198 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 MED19A0JLT2 244 aaPredicted RBP9.96□□□□□ -0.81
SYNE1-237ENST00000539504 SMIM6P0DI80 62 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 HKR1P10072 659 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 GALNSP34059 522 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 CAMLGP49069 296 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 GSK3AP49840 483 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 SULT1A2P50226 295 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 TDGQ13569 410 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 ZNF561Q8N587 486 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 PHOSPHO2Q8TCD6 241 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 OIT3Q8WWZ8 545 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 ZNF251Q9BRH9 671 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 PIAS3Q9Y6X2 628 aa9.96□□□□□ -0.81
SYNE1-237ENST00000539504 C7orf77A4D0Y5 90 aa9.96□□□□□ -0.82
SYNE1-237ENST00000539504 IFNA2P01563 188 aa9.96□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF44P15621 663 aa9.96□□□□□ -0.82
SYNE1-237ENST00000539504 TMEM33P57088 247 aa9.96□□□□□ -0.82
SYNE1-237ENST00000539504 ZNF121P58317 390 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-237ENST00000539504 MIDNQ504T8 468 aa9.96□□□□□ -0.82
SYNE1-237ENST00000539504 IP6K3Q96PC2 410 aa9.96□□□□□ -0.82
SYNE1-237ENST00000539504 KCNK17Q96T54 332 aa9.96□□□□□ -0.82
SYNE1-237ENST00000539504 GSN-AS1Q9NRJ2 163 aa9.96□□□□□ -0.82
SYNE1-237ENST00000539504 C1orf123Q9NWV4 160 aa9.96□□□□□ -0.82
SYNE1-237ENST00000539504 ASH2LQ9UBL3 628 aa9.96□□□□□ -0.82
SYNE1-237ENST00000539504 JTBO76095 146 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 ARG1P05089 322 aa9.95□□□□□ -0.82
SYNE1-237ENST00000539504 FCGR3AP08637 254 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms