RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 CTSZQ9UBR2 303 aa12.84□□□□□ -0.35
CPSF1-211ENST00000533492 POMPQ9Y244 141 aa12.84□□□□□ -0.35
CPSF1-211ENST00000533492 IGHV3OR15-7A0A075B7D8 119 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 TCRBV3S1A0A5B6 114 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 TNFRSF13BO14836 293 aaPredicted RBP12.83□□□□□ -0.36
CPSF1-211ENST00000533492 LHBP01229 141 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 IL5RAQ01344 420 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 SNAPC1Q16533 368 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 MICBQ29980 383 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 TMEM236Q5W0B7 351 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 BRD3OSQ6XYD6 125 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 KRT77Q7Z794 578 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 FAM90A1Q86YD7 464 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 ZDHHC16Q969W1 377 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 SLC7A6OSQ96CW6 309 aaPredicted RBP12.83□□□□□ -0.36
CPSF1-211ENST00000533492 NIPAL2Q9H841 368 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 TVP23BQ9NYZ1 205 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 LAMP5Q9UJQ1 280 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 RHBDD3Q9Y3P4 386 aa12.83□□□□□ -0.36
CPSF1-211ENST00000533492 SOX21Q9Y651 276 aaPredicted RBP12.83□□□□□ -0.36
CPSF1-211ENST00000533492 ZNF879B4DU55 563 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 P2RY10O00398 339 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 TMPRSS2O15393 492 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 TOX4O94842 621 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 MUC1P15941 1255 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-211ENST00000533492 EGR1P18146 543 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 BPIFB3P59826 476 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 CSNK2BP67870 215 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 APOFQ13790 326 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 SLC9A3R2Q15599 337 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 METTL11BQ5VVY1 283 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 TEX36Q5VZQ5 186 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 C11orf53Q8IXP5 236 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 GALNT4Q8N4A0 578 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 PAPD5Q8NDF8 572 aaKnown RBP12.82□□□□□ -0.36
CPSF1-211ENST00000533492 BBS1Q8NFJ9 593 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 DNAJC9Q8WXX5 260 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 NRBF2Q96F24 287 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 C1orf147Q96MC9 270 aaPredicted RBP12.82□□□□□ -0.36
CPSF1-211ENST00000533492 RTL8AQ9BWD3 113 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 SLC25A19Q9HC21 320 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 SMURF1Q9HCE7 757 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 ABCB9Q9NP78 766 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 PAPOLBQ9NRJ5 636 aaKnown RBP12.82□□□□□ -0.36
CPSF1-211ENST00000533492 MPC1Q9Y5U8 109 aa12.82□□□□□ -0.36
CPSF1-211ENST00000533492 ZNF850A8MQ14 1090 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 CLDN34H7C241 214 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 DVL1O14640 695 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 CDIPTO14735 213 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 ECDO95905 644 aaPredicted RBP12.81□□□□□ -0.36
CPSF1-211ENST00000533492 RNASE1P07998 156 aaKnown RBP12.81□□□□□ -0.36
CPSF1-211ENST00000533492 ALOX5APP20292 161 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 CFHR2P36980 270 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 CRISP1P54107 249 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 PRDX4Q13162 271 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 KCTD18Q6PI47 426 aaPredicted RBP12.81□□□□□ -0.36
CPSF1-211ENST00000533492 WDR82Q6UXN9 313 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 KCTD8Q6ZWB6 473 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 BTN2A1Q7KYR7 527 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 SLC36A1Q7Z2H8 476 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 WDR86Q86TI4 376 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 SGMS2Q8NHU3 365 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 ST8SIA4Q92187 359 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 PIGCQ92535 297 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 HIST1H2AAQ96QV6 131 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 YIPF3Q9GZM5 350 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 PPP1R3EQ9H7J1 279 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 KAAG1Q9UBP8 84 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 ZNF391Q9UJN7 358 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 LRP12Q9Y561 859 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 PCDHGB1Q9Y5G3 927 aa12.81□□□□□ -0.36
CPSF1-211ENST00000533492 MDFIC2A0A1B0GVS7 189 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 GSC2O15499 205 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 SFTPBP07988 381 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 SLC2A5P22732 501 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 HCCSP53701 268 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 PSMA6P60900 246 aaKnown RBP12.8□□□□□ -0.36
CPSF1-211ENST00000533492 ARF6P62330 175 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 DEFB112Q30KQ8 113 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 C11orf91Q3C1V1 193 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 LCN1P1Q5VSP4 162 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 OR8B12Q8NGG6 310 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 FAM81AQ8TBF8 368 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 ITPKCQ96DU7 683 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 RNF170Q96K19 258 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 WDFY2Q96P53 400 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 TEAD3Q99594 435 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 CCL13Q99616 98 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 MROQ9BYG7 248 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 PRRG3Q9BZD7 231 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 CNTD2Q9H8S5 307 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 KLHDC2Q9Y2U9 406 aa12.8□□□□□ -0.36
CPSF1-211ENST00000533492 TMEM269A0A1B0GVZ9 245 aa12.79□□□□□ -0.36
CPSF1-211ENST00000533492 TMEM210A6NLX4 147 aa12.79□□□□□ -0.36
CPSF1-211ENST00000533492 HOXA3O43365 443 aaPredicted RBP12.79□□□□□ -0.36
CPSF1-211ENST00000533492 NDUFB3O43676 98 aa12.79□□□□□ -0.36
CPSF1-211ENST00000533492 CST4P01036 141 aa12.79□□□□□ -0.36
CPSF1-211ENST00000533492 MRPL3P09001 348 aaKnown RBP12.79□□□□□ -0.36
CPSF1-211ENST00000533492 ACKR3P25106 362 aa12.79□□□□□ -0.36
CPSF1-211ENST00000533492 MAP2K3P46734 347 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms