RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ZNF740Q8NDX6 193 aa2.75□□□□□ -1.97
CD44-235ENST00000532339 CLDND2Q8NHS1 167 aa2.75□□□□□ -1.97
CD44-235ENST00000532339 DTX3LQ8TDB6 740 aa2.75□□□□□ -1.97
CD44-235ENST00000532339 GTSF1Q8WW33 167 aa2.75□□□□□ -1.97
CD44-235ENST00000532339 JSRP1Q96MG2 331 aaPredicted RBP2.75□□□□□ -1.97
CD44-235ENST00000532339 MCHR1Q99705 422 aa2.75□□□□□ -1.97
CD44-235ENST00000532339 RHBGQ9H310 441 aa2.75□□□□□ -1.97
CD44-235ENST00000532339 CAB39LQ9H9S4 337 aa2.75□□□□□ -1.97
CD44-235ENST00000532339 PAK1IP1Q9NWT1 392 aaPredicted RBP2.75□□□□□ -1.97
CD44-235ENST00000532339 ZNF223Q9UK11 482 aaPredicted RBP2.75□□□□□ -1.97
CD44-235ENST00000532339 COQ4Q9Y3A0 265 aa2.75□□□□□ -1.97
CD44-235ENST00000532339 TIMM10BQ9Y5J6 103 aa2.75□□□□□ -1.97
CD44-235ENST00000532339 KIF25-AS1Q9Y6Z4 181 aa2.75□□□□□ -1.97
CD44-235ENST00000532339 DNAH17Q9UFH2 4485 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 UQCRHLA0A096LP55 91 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 IGHV2-70DA0A0C4DH43 119 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 LOC100131303A0A0U1RQF7 123 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 E9PLD3 99 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 AP3B1O00203 1094 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 WWP2O00308 870 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 FCN1O00602 326 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 NBR2O15453 112 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 GPX5O75715 221 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 LRATO95237 230 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 MPZL1O95297 269 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 LHBP01229 141 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 PRB4P10163 310 aaPredicted RBP2.74□□□□□ -1.97
CD44-235ENST00000532339 SERPINA2P20848 420 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 CD9P21926 228 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 CCT3P49368 545 aaKnown RBP2.74□□□□□ -1.97
CD44-235ENST00000532339 CEBPDP49716 269 aaPredicted RBP2.74□□□□□ -1.97
CD44-235ENST00000532339 EFNB2P52799 333 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 LYZP61626 148 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 SNRPD2P62316 118 aaKnown RBP2.74□□□□□ -1.97
CD44-235ENST00000532339 CXCL6P80162 114 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 FGL1Q08830 312 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 GUSBP1Q15486 140 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 GLYR1Q49A26 553 aaPredicted RBP2.74□□□□□ -1.97
CD44-235ENST00000532339 PHYHD1Q5SRE7 291 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 PDZK1Q5T2W1 519 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 PRAMEF20Q5VT98 475 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 CCDC73Q6ZRK6 1079 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 SSX8Q7RTT4 187 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 COMTD1Q86VU5 262 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 KRTAP11-1Q8IUC1 163 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 CLEC4FQ8N1N0 589 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 RPP25LQ8N5L8 163 aaKnown RBP2.74□□□□□ -1.97
CD44-235ENST00000532339 LINC01555Q8NAE3 123 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 MFSD9Q8NBP5 474 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 OR5AR1Q8NGP9 310 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 OR6K3Q8NGY3 331 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 POP5Q969H6 163 aaKnown RBP2.74□□□□□ -1.97
CD44-235ENST00000532339 APOL2Q9BQE5 337 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 NIPSNAP3BQ9BS92 247 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 DOHHQ9BU89 302 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 PARD6BQ9BYG5 372 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 POTEKPQ9BYX7 375 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 RACGAP1Q9H0H5 632 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 RAB1BQ9H0U4 201 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 C16orf95Q9H693 158 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 RNF122Q9H9V4 155 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 EDA2RQ9HAV5 297 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 PROK2Q9HC23 129 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 B3GNT2Q9NY97 397 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 ASF1AQ9Y294 204 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 C15orf41Q9Y2V0 281 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 SCN3AQ9NY46 2000 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 PKD1P98161 4303 aa2.74□□□□□ -1.97
CD44-235ENST00000532339 FLG2Q5D862 2391 aaPredicted RBP2.74□□□□□ -1.97
CD44-235ENST00000532339 SNRNP200O75643 2136 aaKnown RBP2.74□□□□□ -1.97
CD44-235ENST00000532339 FAT1Q14517 4588 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 XKRY2A2RUG3 117 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 SNTNA6NMZ2 147 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 ZNF705EA8MWA4 302 aaPredicted RBP2.73□□□□□ -1.97
CD44-235ENST00000532339 DFFAO00273 331 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 RS1O15537 224 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 ZNF264O43296 627 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 FCMRO60667 390 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 SCGNO76038 276 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 MYO1DO94832 1006 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 DUSP14O95147 198 aaKnown RBP2.73□□□□□ -1.97
CD44-235ENST00000532339 AP2A1O95782 977 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 ERCC1P07992 297 aaPredicted RBP2.73□□□□□ -1.97
CD44-235ENST00000532339 PGAM2P15259 253 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 NCK1P16333 377 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 IL32P24001 234 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 EMX1Q04741 257 aaPredicted RBP2.73□□□□□ -1.97
CD44-235ENST00000532339 SERTAD2Q14140 314 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 ZNF791Q3KP31 576 aaPredicted RBP2.73□□□□□ -1.97
CD44-235ENST00000532339 PTPN20Q4JDL3 420 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 PAN3Q58A45 887 aaKnown RBP2.73□□□□□ -1.97
CD44-235ENST00000532339 CCDC183Q5T5S1 534 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 OR4F3Q6IEY1 312 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 CGB2Q6NT52 195 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 ZYG11AQ6WRX3 759 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 ZNF620Q6ZNG0 422 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 ARCQ7LC44 396 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 TPRA1Q86W33 373 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 CDH26Q8IXH8 852 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 FAM71AQ8IYT1 594 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms