RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 GYS2P54840 703 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 ZNF121P58317 390 aaPredicted RBP12.2□□□□□ -0.46
VPS28-215ENST00000531924 IL5RAQ01344 420 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 TEX36Q5VZQ5 186 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 CMTM4Q8IZR5 234 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 OR1M1Q8NGA1 313 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 NSL1Q96IY1 281 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 CCL13Q99616 98 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 ABHD6Q9BV23 337 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 CHIAQ9BZP6 476 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 OR51V1Q9H2C8 321 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 RGCCQ9H4X1 137 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 MED20Q9H944 212 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 CMC2Q9NRP2 79 aa12.2□□□□□ -0.46
VPS28-215ENST00000531924 NDUFB3O43676 98 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 GLCEO94923 617 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 LHBP01229 141 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 MMP9P14780 707 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 ANOS1P23352 680 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 TRIM25Q14258 630 aaKnown RBP12.19□□□□□ -0.46
VPS28-215ENST00000531924 CDONQ4KMG0 1287 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 LCN8Q6JVE9 175 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 BRICD5Q6PL45 260 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 KCTD8Q6ZWB6 473 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 PDZD9Q8IXQ8 264 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 IQCF1Q8N6M8 205 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 GIPC3Q8TF64 312 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 THEM6Q8WUY1 208 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 RNF133Q8WVZ7 376 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 RTL8AQ9BWD3 113 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 SIRPDQ9H106 197 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 C1RLQ9NZP8 487 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 KAAG1Q9UBP8 84 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 DNAJB11Q9UBS4 358 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 RPUSD1Q9UJJ7 312 aaKnown RBP12.19□□□□□ -0.46
VPS28-215ENST00000531924 CAB39Q9Y376 341 aaPredicted RBP12.19□□□□□ -0.46
VPS28-215ENST00000531924 RHBDD3Q9Y3P4 386 aa12.19□□□□□ -0.46
VPS28-215ENST00000531924 A0A1B0GVI7 797 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 TCRBV5S2A0A599 114 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 BTBD17A6NE02 478 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 NKX6-3A6NJ46 265 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 PRR23D1E9PI22 279 aaPredicted RBP12.18□□□□□ -0.46
VPS28-215ENST00000531924 CDIPTO14735 213 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 CST1P01037 141 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 PRR23D2P0DMB1 279 aaPredicted RBP12.18□□□□□ -0.46
VPS28-215ENST00000531924 RAP2AP10114 183 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 EEF1B2P24534 225 aaKnown RBP12.18□□□□□ -0.46
VPS28-215ENST00000531924 GMFBP60983 142 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 CSNK2BP67870 215 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 IKZF1Q13422 519 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 GK3PQ14409 553 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 LRRC10Q5BKY1 277 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 WDR38Q5JTN6 314 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 LINC01590Q5TEZ4 76 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 OLFML2AQ68BL7 652 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 RHOUQ7L0Q8 258 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 TIGD4Q8IY51 512 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 GALNT4Q8N4A0 578 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 ZNF454Q8N9F8 522 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 DYRK2Q92630 601 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 HIST1H2AAQ96QV6 131 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 CCT8L2Q96SF2 557 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 FEVQ99581 238 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 NIPSNAP1Q9BPW8 284 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 TEX12Q9BXU0 123 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 DPAGT1Q9H3H5 408 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 ZNF556Q9HAH1 456 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 ABCB9Q9NP78 766 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 VNN3Q9NY84 501 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 MPC1Q9Y5U8 109 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 KPTNQ9Y664 436 aa12.18□□□□□ -0.46
VPS28-215ENST00000531924 A0A0U1RQK1 487 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 hCG_38984A0A1B0GV85 526 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 CLPSL1A2RUU4 121 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 GPR37O15354 613 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 KCNAB3O43448 404 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 NDUFA7O95182 113 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 HMGN1P05114 100 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 LYNP07948 512 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 OPRL1P41146 370 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 RPL15P61313 204 aaKnown RBP12.17□□□□□ -0.46
VPS28-215ENST00000531924 KLHL12Q53G59 568 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 WDR82Q6UXN9 313 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 CD300LDQ6UXZ3 194 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 VMO1Q7Z5L0 202 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 WDR86Q86TI4 376 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 C11orf53Q8IXP5 236 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 FAM216BQ8N7L0 139 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 FAM81AQ8TBF8 368 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 WFDC12Q8WWY7 111 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 H1FXQ92522 213 aaKnown RBP12.17□□□□□ -0.46
VPS28-215ENST00000531924 C12orf43Q96C57 262 aaKnown RBP12.17□□□□□ -0.46
VPS28-215ENST00000531924 CCDC124Q96CT7 223 aaKnown RBP12.17□□□□□ -0.46
VPS28-215ENST00000531924 CHID1Q9BWS9 393 aa12.17□□□□□ -0.46
VPS28-215ENST00000531924 DOCK11Q5JSL3 2073 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 TMEM210A6NLX4 147 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 ZNF850A8MQ14 1090 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 M0QZ24 198 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 ACOT8O14734 319 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 GPR137BO60478 399 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms