RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	SLC16A5	O15375	505 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	SSNA1	O43805	119 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	MFSD11	O43934	449 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	SCEL	O95171	688 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	RCBTB2	O95199	551 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	TMEM50A	O95807	157 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	PMP2	P02689	132 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	C1QA	P02745	245 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	AMBP	P02760	352 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	TYMS	P04818	313 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	OR4Q2	P0C623	313 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	UROS	P10746	265 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	COX7A2	P14406	83 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	CD58	P19256	250 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	KITLG	P21583	273 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	GDF1	P27539	372 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	CHRNB4	P30926	498 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	OR10J1	P30954	320 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	SRD5A2	P31213	254 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	FGF9	P31371	208 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-231	ENST00000531110	TGFBR1	P36897	503 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	OPRD1	P41143	372 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	CAV2	P51636	162 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	PIGP	P57054	158 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	ERVPABLB-1	P60509	514 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	LSM3	P62310	102 aa	Known RBP	4.9	□□□□□ -1.63
CD44-231	ENST00000531110	PPIA	P62937	165 aa	Known RBP	4.9	□□□□□ -1.63
CD44-231	ENST00000531110	OC90	Q02509	493 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-231	ENST00000531110	BAX	Q07812	192 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	AES	Q08117	197 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	TMEM132D	Q14C87	1099 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	MAD2L1BP	Q15013	274 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-231	ENST00000531110	TEAD2	Q15562	447 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	CRY2	Q49AN0	593 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	CTSL3P	Q5NE16	218 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	HENMT1	Q5T8I9	393 aa	Known RBP	4.9	□□□□□ -1.63
CD44-231	ENST00000531110	RAET1L	Q5VY80	246 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	GGNBP1	Q5YKI7	109 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	OR4A47	Q6IF82	309 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	ADAM5	Q6NVV9	412 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	B3GLCT	Q6Y288	498 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	PNKD	Q8N490	385 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	KCNRG	Q8N5I3	272 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	RNF148	Q8N7C7	305 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	OR4K2	Q8NGD2	314 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	OR52B6	Q8NGF0	335 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	NFKBID	Q8NI38	313 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	ARRDC2	Q8TBH0	407 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	MRAP	Q8TCY5	172 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	ZNF675	Q8TD23	568 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	DOK4	Q8TEW6	326 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	OR8D1	Q8WZ84	308 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	NTNG2	Q96CW9	530 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	CPNE2	Q96FN4	548 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-231	ENST00000531110	MRAP2	Q96G30	205 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	REEP6	Q96HR9	211 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	THOC3	Q96J01	351 aa	Known RBP	4.9	□□□□□ -1.63
CD44-231	ENST00000531110	TGM7	Q96PF1	710 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	NPY6R	Q99463	290 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	PARK7	Q99497	189 aa	Known RBP	4.9	□□□□□ -1.63
CD44-231	ENST00000531110	RSG1	Q9BU20	258 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	HINT2	Q9BX68	163 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	P2RY12	Q9H244	342 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	ZDHHC6	Q9H6R6	413 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	EGLN3	Q9H6Z9	239 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	ZDHHC11	Q9H8X9	412 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	RPF1	Q9H9Y2	349 aa	Known RBP	4.9	□□□□□ -1.63
CD44-231	ENST00000531110	TMEM38B	Q9NVV0	291 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	TMEM242	Q9NWH2	141 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	MED29	Q9NX70	200 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	B3GAT1	Q9P2W7	334 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	COMMD3	Q9UBI1	195 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	NAT8	Q9UHE5	227 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	NEU3	Q9UQ49	428 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	RASD1	Q9Y272	281 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	LRP12	Q9Y561	859 aa		4.9	□□□□□ -1.63
CD44-231	ENST00000531110	NUP153	P49790	1475 aa	Known RBP	4.89	□□□□□ -1.63
CD44-231	ENST00000531110	IGKV2D-30	A0A075B6S6	120 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	TRAV26-1	A0A087WT03	109 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110		A0A0A6YYC8	382 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-231	ENST00000531110		A0A1B0GW64	132 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110		A0A1W2PQM1	296 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	TVP23A	A6NH52	213 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	FBLL1	A6NHQ2	334 aa	Known RBP	4.89	□□□□□ -1.63
CD44-231	ENST00000531110	GLOD5	A6NK44	160 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	FAM159B	A6NKW6	160 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	HEPACAM2	A8MVW5	462 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110		I3L1I5	382 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-231	ENST00000531110	MANBA	O00462	879 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	ARPC2	O15144	300 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	CTDSPL	O15194	276 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	RBFOX2	O43251	390 aa	Known RBP eCLIP	4.89	□□□□□ -1.63
CD44-231	ENST00000531110	DUSP11	O75319	330 aa	Known RBP	4.89	□□□□□ -1.63
CD44-231	ENST00000531110	SAP30	O75446	220 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	REM1	O75628	298 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	ADAP1	O75689	374 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	TNFSF13	O75888	250 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	NDUFB4	O95168	129 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	TF	P02787	698 aa		4.89	□□□□□ -1.63
CD44-231	ENST00000531110	FABP3	P05413	133 aa		4.89	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms