RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ARHGAP5-AS1Q96IT6 56 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 ADAT1Q9BUB4 502 aaKnown RBP16.99■□□□□ 0.31
VPS28-213ENST00000530983 METTL7AQ9H8H3 244 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 ASF1BQ9NVP2 202 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 B3GALT1Q9Y5Z6 326 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 H0YIZ8 118 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 MFNGO00587 321 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 HCKP08631 526 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 UQCC3Q6UW78 93 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 ARMC10Q8N2F6 343 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 ZSCAN4Q8NAM6 433 aaPredicted RBP16.99■□□□□ 0.31
VPS28-213ENST00000530983 SSC4DQ8WTU2 575 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 OR5B2Q96R09 309 aa16.99■□□□□ 0.31
VPS28-213ENST00000530983 PHF7Q9BWX1 381 aaPredicted RBP16.99■□□□□ 0.31
VPS28-213ENST00000530983 ZMAT5Q9UDW3 170 aaKnown RBP16.99■□□□□ 0.31
VPS28-213ENST00000530983 NCOA6Q14686 2063 aaPredicted RBP16.99■□□□□ 0.31
VPS28-213ENST00000530983 IGKV1-9A0A0C4DH69 117 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 TMEM218A2RU14 115 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 OR2J2O76002 312 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 ADCYAP1P18509 176 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 KLK2P20151 261 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 AKR1C2P52895 323 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 AKR1C1Q04828 323 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 GFOD2Q3B7J2 385 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 ACTBL2Q562R1 376 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 HAGHLQ6PII5 290 aaPredicted RBP16.98■□□□□ 0.31
VPS28-213ENST00000530983 CLEC18BQ6UXF7 455 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 CBLN2Q8IUK8 224 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 OR6X1Q8NH79 312 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 OCSTAMPQ9BR26 566 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 PRR13Q9NZ81 148 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 MYOTQ9UBF9 498 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 RAB19A4D1S5 217 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 E9PLN8 166 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 F8W036 122 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 MBTPS2O43462 519 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 ADAP1O75689 374 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 CRTAPO75718 401 aaPredicted RBP16.98■□□□□ 0.31
VPS28-213ENST00000530983 SFT2D2O95562 160 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 PI3P19957 117 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 RAB13P51153 203 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 SUPT4H1P63272 117 aaKnown RBP16.98■□□□□ 0.31
VPS28-213ENST00000530983 HIST3H3Q16695 136 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 DMRTC1Q5HYR2 192 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 FAM57BQ71RH2 274 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 RAB11FIP2Q7L804 512 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 SLC30A7Q8NEW0 376 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 OR5L2Q8NGL0 311 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 CYTL1Q9NRR1 136 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 WDFY3Q8IZQ1 3526 aa16.98■□□□□ 0.31
VPS28-213ENST00000530983 QDPRP09417 244 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 CYCSP99999 105 aaKnown RBP16.97■□□□□ 0.31
VPS28-213ENST00000530983 SLC9A3R2Q15599 337 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 PNLIPRP3Q17RR3 467 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 PEG10Q86TG7 708 aaKnown RBP16.97■□□□□ 0.31
VPS28-213ENST00000530983 BHLHE23Q8NDY6 225 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 OR2M3Q8NG83 312 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 OR56B1Q8NGI3 324 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 WNT2BQ93097 391 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 MICU1Q9BPX6 476 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 EML6Q6ZMW3 1958 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 C5orf63A6NC05 138 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 TPT1P13693 172 aaKnown RBP16.97■□□□□ 0.31
VPS28-213ENST00000530983 KCNMB1Q16558 191 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 SGCAQ16586 387 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 ZNF528Q3MIS6 628 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 CCDC157Q569K6 752 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 DOK3Q7L591 496 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 BAP18Q8IXM2 172 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 SVBPQ8N300 66 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 GTPBP8Q8N3Z3 284 aaPredicted RBP16.97■□□□□ 0.31
VPS28-213ENST00000530983 OR6C1Q96RD1 312 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 GPER1Q99527 375 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 RTBDNQ9BSG5 229 aaPredicted RBP16.97■□□□□ 0.31
VPS28-213ENST00000530983 TMEM100Q9NV29 134 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 FLVCR1Q9Y5Y0 555 aa16.97■□□□□ 0.31
VPS28-213ENST00000530983 A0A0B4J2A0 478 aa16.96■□□□□ 0.31
VPS28-213ENST00000530983 SFTPDP35247 375 aa16.96■□□□□ 0.31
VPS28-213ENST00000530983 CRIP3Q6Q6R5 217 aa16.96■□□□□ 0.31
VPS28-213ENST00000530983 CPEB2Q7Z5Q1 589 aaKnown RBP16.96■□□□□ 0.31
VPS28-213ENST00000530983 LHFPL1Q86WI0 220 aa16.96■□□□□ 0.31
VPS28-213ENST00000530983 TDHQ8IZJ6 230 aa16.96■□□□□ 0.31
VPS28-213ENST00000530983 ZNF283Q8N7M2 679 aa16.96■□□□□ 0.31
VPS28-213ENST00000530983 OXGR1Q96P68 337 aa16.96■□□□□ 0.31
VPS28-213ENST00000530983 RAB18Q9NP72 206 aa16.96■□□□□ 0.31
VPS28-213ENST00000530983 SHPKQ9UHJ6 478 aa16.96■□□□□ 0.31
VPS28-213ENST00000530983 MRPS17Q9Y2R5 130 aaKnown RBP16.96■□□□□ 0.31
VPS28-213ENST00000530983 MSGN1A6NI15 193 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 ZNF43P17038 809 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 PVALBP20472 110 aaPredicted RBP16.96■□□□□ 0.3
VPS28-213ENST00000530983 FPR2P25090 351 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 AFF3P51826 1226 aaKnown RBP16.96■□□□□ 0.3
VPS28-213ENST00000530983 S100A12P80511 92 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 NAAAQ02083 359 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 ANKRD55Q3KP44 614 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 AADACL3Q5VUY0 350 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 TMEM71Q6P5X7 295 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 OR5H2Q8NGV7 314 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 OR14K1Q8NGZ2 314 aa16.96■□□□□ 0.3
VPS28-213ENST00000530983 OR13G1Q8NGZ3 307 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms