RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ACKR1Q16570 336 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 TMEM44Q2T9K0 475 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 CDONQ4KMG0 1287 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 CCDC58Q4VC31 144 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 KLHL22Q53GT1 634 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 ARMCX4Q5H9R4 360 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 LCE1DQ5T752 114 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SYT6Q5T7P8 510 aaPredicted RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 LCN1P1Q5VSP4 162 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SLC25A25Q6KCM7 469 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 PLXDC2Q6UX71 529 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SLC16A12Q6ZSM3 486 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SLC35D2Q76EJ3 337 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 TRILQ7L0X0 811 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SSX6Q7RTT6 188 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 ZNF367Q7RTV3 350 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 ZNF554Q86TJ5 538 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 PM20D2Q8IYS1 436 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 UBQLNLQ8IYU4 475 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 BATF2Q8N1L9 274 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 RFLNBQ8N5W9 214 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 COMMD1Q8N668 190 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 TMEM251Q8N6I4 163 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 NANOGP1Q8N7R0 232 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 ZFP41Q8N8Y5 198 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SYT14Q8NB59 555 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 UXS1Q8NBZ7 420 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 PROKR2Q8NFJ6 384 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 FDCSPQ8NFU4 85 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 OR10H4Q8NGA5 316 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 OR6K6Q8NGW6 343 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 ZNF519Q8TB69 540 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SLC25A43Q8WUT9 341 aaPredicted RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 ASB10Q8WXI3 467 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 RPL3LQ92901 407 aaKnown RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 TMEM186Q96B77 213 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 C12orf43Q96C57 262 aaKnown RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 DGCR14Q96DF8 476 aaKnown RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 YIPF6Q96EC8 236 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 ELMOD3Q96FG2 381 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 LURAP1Q96LR2 239 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SFXN2Q96NB2 322 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 OPALINQ96PE5 141 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 DDOQ99489 341 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 TSC22D3Q99576 134 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 TEAD3Q99594 435 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 ALG12Q9BV10 488 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 EMC6Q9BV81 110 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 FUNDC2Q9BWH2 189 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 MND1Q9BWT6 205 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SSBP3Q9BWW4 388 aaPredicted RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 CDCA4Q9BXL8 241 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SRXN1Q9BYN0 137 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 TTTY12Q9BZ98 90 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 NMNAT2Q9BZQ4 307 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 OR2B2Q9GZK3 357 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SYT4Q9H2B2 425 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 TXNIPQ9H3M7 391 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 TPK1Q9H3S4 243 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 ZNF703Q9H7S9 590 aaPredicted RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 METTL8Q9H825 291 aaKnown RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 ADGRL4Q9HBW9 690 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SERTAD4Q9NUC0 356 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 GAR1Q9NY12 217 aaKnown RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 NDUFA13Q9P0J0 144 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 KLHL13Q9P2N7 655 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 B3GAT1Q9P2W7 334 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 RSL24D1Q9UHA3 163 aaKnown RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 BOKQ9UMX3 212 aaPredicted RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 NPIPA1Q9UND3 350 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 DHDHQ9UQ10 334 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 ERGIC3Q9Y282 383 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 EXOGQ9Y2C4 368 aaKnown RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 KLF13Q9Y2Y9 288 aaPredicted RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 LSM2Q9Y333 95 aaKnown RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 EXOSC1Q9Y3B2 195 aaKnown RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 HDGFL3Q9Y3E1 203 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 PCDHGB1Q9Y5G3 927 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 LIPGQ9Y5X9 500 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 CACNG2Q9Y698 323 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 SIRT4Q9Y6E7 314 aaPredicted RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 ITPR2Q14571 2701 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 RAI1Q7Z5J4 1906 aaPredicted RBP3.66□□□□□ -1.82
CD44-226ENST00000527889 F8P00451 2351 aa3.66□□□□□ -1.82
CD44-226ENST00000527889 LRBAP50851 2863 aa3.65□□□□□ -1.82
CD44-226ENST00000527889 TMEM129A0AVI4 362 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 DAPL1A0PJW8 107 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 IRGMA1A4Y4 181 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 SLC22A23A1A5C7 686 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 PRSS37A4D1T9 235 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 HELTA6NFD8 242 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 OOEPA6NGQ2 149 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 CBY3A6NI87 242 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 NPIPB11E5RHQ5 1161 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 J3QRE1 110 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 ZNF701M0R085 212 aaPredicted RBP3.65□□□□□ -1.83
CD44-226ENST00000527889 MPPED1O15442 326 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 ZNHIT1O43257 154 aa3.65□□□□□ -1.83
CD44-226ENST00000527889 TRAF3IP2O43734 574 aaPredicted RBP3.65□□□□□ -1.83
CD44-226ENST00000527889 CXCL13O43927 109 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms