RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 C10orf107Q8IVU9 208 aa4□□□□□ -1.77
SKP1-213ENST00000524288 OR1N2Q8NGR9 330 aa4□□□□□ -1.77
SKP1-213ENST00000524288 ZNF420Q8TAQ5 688 aaPredicted RBP4□□□□□ -1.77
SKP1-213ENST00000524288 PDCD6IPQ8WUM4 868 aaKnown RBP4□□□□□ -1.77
SKP1-213ENST00000524288 CAPSLQ8WWF8 208 aa4□□□□□ -1.77
SKP1-213ENST00000524288 CDKL2Q92772 493 aa4□□□□□ -1.77
SKP1-213ENST00000524288 ASB9Q96DX5 294 aa4□□□□□ -1.77
SKP1-213ENST00000524288 ANKRD36BP1Q96IX9 119 aa4□□□□□ -1.77
SKP1-213ENST00000524288 RBBP8Q99708 897 aa4□□□□□ -1.77
SKP1-213ENST00000524288 NRIP2Q9BQI9 281 aa4□□□□□ -1.77
SKP1-213ENST00000524288 MTG1Q9BT17 334 aaPredicted RBP4□□□□□ -1.77
SKP1-213ENST00000524288 SNRNP25Q9BV90 132 aaKnown RBP4□□□□□ -1.77
SKP1-213ENST00000524288 CALN1Q9BXU9 219 aa4□□□□□ -1.77
SKP1-213ENST00000524288 GABARAPL3Q9BY60 117 aa4□□□□□ -1.77
SKP1-213ENST00000524288 DRC3Q9H069 523 aa4□□□□□ -1.77
SKP1-213ENST00000524288 BEX1Q9HBH7 125 aa4□□□□□ -1.77
SKP1-213ENST00000524288 KCNJ16Q9NPI9 418 aa4□□□□□ -1.77
SKP1-213ENST00000524288 MARCOQ9UEW3 520 aaPredicted RBP4□□□□□ -1.77
SKP1-213ENST00000524288 RSL24D1Q9UHA3 163 aaKnown RBP4□□□□□ -1.77
SKP1-213ENST00000524288 NEU3Q9UQ49 428 aa4□□□□□ -1.77
SKP1-213ENST00000524288 RNF11Q9Y3C5 154 aa4□□□□□ -1.77
SKP1-213ENST00000524288 PLXNA3P51805 1871 aa4□□□□□ -1.77
SKP1-213ENST00000524288 NLRC5Q86WI3 1866 aa4□□□□□ -1.77
SKP1-213ENST00000524288 MYO16Q9Y6X6 1858 aa4□□□□□ -1.77
SKP1-213ENST00000524288 GTF3C1Q12789 2109 aa4□□□□□ -1.77
SKP1-213ENST00000524288 CCL15-CCL14A0A0B4J2E2 113 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 ZNF816-ZNF321PA0A0X1KG74 233 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 HIDE1A8MVS5 230 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 M0QYV0 167 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 TXNDC9O14530 226 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 VAPBO95292 243 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 SERPINA5P05154 406 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 ERCC1P07992 297 aaPredicted RBP3.99□□□□□ -1.77
SKP1-213ENST00000524288 ACSM4P0C7M7 580 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 HPGDP15428 266 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 PSMC3P17980 439 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 TNFSF9P41273 254 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 RPS5P46782 204 aaKnown RBP3.99□□□□□ -1.77
SKP1-213ENST00000524288 UQCRFS1P47985 274 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 RFX3P48380 749 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 MRPL19P49406 292 aaKnown RBP3.99□□□□□ -1.77
SKP1-213ENST00000524288 NUDT2P50583 147 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 RAB10P61026 200 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 MAPRE2Q15555 327 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 PSMD5Q16401 504 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 CCL15Q16663 113 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 RFX4Q33E94 735 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 NCBP2-AS2Q69YL0 99 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 C22orf42Q6IC83 251 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 FAM45BPQ6NSW5 357 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 STRADAQ7RTN6 431 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 TMEM135Q86UB9 458 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 ZBTB8OSQ8IWT0 167 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 CMTM1Q8IZ96 169 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 FAM45AQ8TCE6 357 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 RXFP2Q8WXD0 754 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 GEMIN6Q8WXD5 167 aaKnown RBP3.99□□□□□ -1.77
SKP1-213ENST00000524288 TMEM158Q8WZ71 300 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 CCDC124Q96CT7 223 aaKnown RBP3.99□□□□□ -1.77
SKP1-213ENST00000524288 CERS2Q96G23 380 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 DNAJC1Q96KC8 554 aaKnown RBP3.99□□□□□ -1.77
SKP1-213ENST00000524288 OR52B2Q96RD2 323 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 GPR22Q99680 433 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 RPF2Q9H7B2 306 aaKnown RBP3.99□□□□□ -1.77
SKP1-213ENST00000524288 NANOGQ9H9S0 305 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 ZNF302Q9NR11 478 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 ARMC1Q9NVT9 282 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 PDP1Q9P0J1 537 aaPredicted RBP3.99□□□□□ -1.77
SKP1-213ENST00000524288 TMEM216Q9P0N5 145 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 CD300AQ9UGN4 299 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 GNPTGQ9UJJ9 305 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 ZNF225Q9UK10 706 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 CHD5Q8TDI0 1954 aa3.99□□□□□ -1.77
SKP1-213ENST00000524288 ZNF106Q9H2Y7 1883 aaKnown RBP3.98□□□□□ -1.77
SKP1-213ENST00000524288 A0A087WXM4 84 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 PFDN1O60925 122 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 CTAG2O75638 210 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 OR2F2O95006 317 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 ZNF250P15622 560 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 ZNF17P17021 662 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 SDC4P31431 198 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 NUDT1P36639 197 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 SLC26A3P40879 764 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 RPL14P50914 215 aaKnown RBP3.98□□□□□ -1.77
SKP1-213ENST00000524288 PSMD7P51665 324 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 CCR8P51685 355 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 NCBP2P52298 156 aaKnown RBP eCLIP3.98□□□□□ -1.77
SKP1-213ENST00000524288 CRISP1P54107 249 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 UGT2B15P54855 530 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 DNAJB13P59910 316 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 NUTF2P61970 127 aaKnown RBP3.98□□□□□ -1.77
SKP1-213ENST00000524288 RPS21P63220 83 aaKnown RBP3.98□□□□□ -1.77
SKP1-213ENST00000524288 PPIDQ08752 370 aaKnown RBP3.98□□□□□ -1.77
SKP1-213ENST00000524288 TMED1Q13445 227 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 IL18Q14116 193 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 PAFAH1B3Q15102 231 aaKnown RBP3.98□□□□□ -1.77
SKP1-213ENST00000524288 SGCAQ16586 387 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 GUCA2BQ16661 112 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 VAX1Q5SQQ9 334 aa3.98□□□□□ -1.77
SKP1-213ENST00000524288 LINC00299Q6ZSB3 139 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms