RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CCL13Q99616 98 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 METTL8Q9H825 291 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 MPC1Q9Y5U8 109 aa17.33■□□□□ 0.36
SQSTM1-210ENST00000506042 ZNF593O00488 134 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 PAICSP22234 425 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 POU1F1P28069 291 aa17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 GABRA5P31644 462 aa17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 SPATS1Q496A3 300 aa17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 Q6ZSV7 163 aa17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 SHFQ7M4L6 423 aa17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 SLC16A9Q7RTY1 509 aa17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 LY6G5BQ8NDX9 201 aa17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 OR10Z1Q8NGY1 313 aa17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 FAM110DQ8TAY7 271 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 IL20Q9NYY1 176 aa17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 ZNF391Q9UJN7 358 aa17.32■□□□□ 0.36
SQSTM1-210ENST00000506042 ZNF816-ZNF321PA0A0X1KG74 233 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 MEIOCA2RUB1 952 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 M0R1W7 72 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 SLC2A1P11166 492 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 HSD17B1P14061 328 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 IKZF1Q13422 519 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 EIF2B1Q14232 305 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 WDR82Q6UXN9 313 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 RASSF6Q6ZTQ3 369 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 RNF148Q8N7C7 305 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 OR2T33Q8NG76 320 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 OR5D13Q8NGL4 314 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 OR4C13Q8NGP0 309 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 PGAM5Q96HS1 289 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 DCTN5Q9BTE1 182 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 EGLN3Q9H6Z9 239 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 SIRT7Q9NRC8 400 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 HAO2Q9NYQ3 351 aa17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 SF3B6Q9Y3B4 125 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-210ENST00000506042 hCG_1809904A0A1W2PP81 198 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 A0A1W2PPE2 198 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 A0A1W2PR64 198 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 A0A1W2PRV1 198 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 RNASEK-C17orf49H0YIS7 233 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 TNFRSF11BO00300 401 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 RPS27P42677 84 aaKnown RBP17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 UBE2E1P51965 193 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 SLC25A1P53007 311 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 FAM3AP98173 230 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 KCTD8Q6ZWB6 473 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 REC114Q7Z4M0 266 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 PIP4P2Q8N4L2 257 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 SLC37A3Q8NCC5 494 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 OR51L1Q8NGJ5 315 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 C8orf46Q8TAG6 207 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 ITFG2Q969R8 447 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 INTS14Q96SY0 518 aa17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 SLC25A10Q9UBX3 287 aaPredicted RBP17.3■□□□□ 0.36
SQSTM1-210ENST00000506042 GLCEO94923 617 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 CCNB2O95067 398 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 H2BFMP0C1H6 154 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 EGR3Q06889 387 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 POU4F2Q12837 409 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 HERPUD1Q15011 391 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 GFOD2Q3B7J2 385 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 ATPAF1Q5TC12 328 aaPredicted RBP17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 TIGD4Q8IY51 512 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 OR51G2Q8NGK0 314 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 OR2T6Q8NHC8 308 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 TSSK6Q9BXA6 273 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 FBLN5Q9UBX5 448 aa17.29■□□□□ 0.36
SQSTM1-210ENST00000506042 TET2Q6N021 2002 aaPredicted RBP17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 DHRS12A0PJE2 317 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 CDIPTO14735 213 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 TSPAN15O95858 294 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 SEMG1P04279 462 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 NDUFB7P17568 137 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 SPI1P17947 270 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 SAA4P35542 130 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 GSK3AP49840 483 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 CAV3P56539 151 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 C16orf89Q6UX73 402 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 LIAT1Q6ZQX7 453 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 FAM57BQ71RH2 274 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 PGAM4Q8N0Y7 254 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 FAM216BQ8N7L0 139 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 OR6N2Q8NGY6 317 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 CLPTM1LQ96KA5 538 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 PPA2Q9H2U2 334 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 RANBP3Q9H6Z4 567 aaPredicted RBP17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 MED4Q9NPJ6 270 aa17.28■□□□□ 0.36
SQSTM1-210ENST00000506042 TRBV23-1A0A0A0MS06 115 aa17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 H0YAE9 185 aa17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 ACOT8O14734 319 aa17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 ARPC2O15144 300 aa17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 SASH3O75995 380 aa17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 TGM4P49221 684 aa17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 HMGA2P52926 109 aa17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 MXRA7P84157 204 aa17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 CRMP1Q14194 572 aa17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 STUMQ69YW2 141 aa17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 ERI1Q8IV48 349 aaKnown RBP17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 BEND2Q8NDZ0 799 aa17.27■□□□□ 0.36
SQSTM1-210ENST00000506042 TEX47Q8TBZ9 253 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms