RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 CSNK2A3Q8NEV1 391 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 OR51G2Q8NGK0 314 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 SPATA3Q8NHX4 192 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 ZNF418Q8TF45 676 aaPredicted RBP11.91□□□□□ -0.5
HOXC9-202ENST00000504557 LRRC29Q8WV35 223 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 PPP1R14AQ96A00 147 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 FAM71F1Q96KD3 344 aaPredicted RBP11.91□□□□□ -0.5
HOXC9-202ENST00000504557 APOL4Q9BPW4 351 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 MRI1Q9BV20 369 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 RASSF4Q9H2L5 321 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 NIPAL2Q9H841 368 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 CLN8Q9UBY8 286 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 OPN4Q9UHM6 478 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 ENOPH1Q9UHY7 261 aa11.91□□□□□ -0.5
HOXC9-202ENST00000504557 SLC22A31A6NKX4 558 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 ANXA2P2A6NMY6 339 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 LGALS8O00214 317 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 EBAG9O00559 213 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 ADAM20O43506 726 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 VENTXO95231 258 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 ZNF12P17014 697 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 RIDAP52758 137 aaKnown RBP11.9□□□□□ -0.5
HOXC9-202ENST00000504557 MFGE8Q08431 387 aaPredicted RBP11.9□□□□□ -0.5
HOXC9-202ENST00000504557 ZIK1Q3SY52 487 aaPredicted RBP11.9□□□□□ -0.5
HOXC9-202ENST00000504557 AADACL4Q5VUY2 407 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 NXNL2Q5VZ03 156 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 DCDC5Q6ZRR9 648 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 TEX29Q8N6K0 151 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 OR1M1Q8NGA1 313 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 OR8B4Q96RC9 309 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 MICU1Q9BPX6 476 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 PBOV1Q9GZY1 135 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 RGCCQ9H4X1 137 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 ADGRL4Q9HBW9 690 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 INSIG2Q9Y5U4 225 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 TMEM14AQ9Y6G1 99 aa11.9□□□□□ -0.5
HOXC9-202ENST00000504557 OOEPA6NGQ2 149 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 A8MXK9 166 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 ZNF670-ZNF695F2Z2N8 137 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 H3BSH0 61 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 EI24O14681 340 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 CDIPTO14735 213 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 RPP14O95059 124 aaKnown RBP11.89□□□□□ -0.51
HOXC9-202ENST00000504557 ATP6V1E1P36543 226 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 ACTR3P61158 418 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 ELF3P78545 371 aaPredicted RBP11.89□□□□□ -0.51
HOXC9-202ENST00000504557 ODF4Q2M2E3 257 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 ZNF829Q3KNS6 432 aaPredicted RBP11.89□□□□□ -0.51
HOXC9-202ENST00000504557 CEP78Q5JTW2 689 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 ZNF322Q6U7Q0 402 aaPredicted RBP11.89□□□□□ -0.51
HOXC9-202ENST00000504557 BTNL3Q6UXE8 466 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 GID4Q8IVV7 300 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 ZNF679Q8IYX0 411 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 FTMTQ8N4E7 242 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 GCSAMQ8N6F7 178 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 OR51E1Q8TCB6 317 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 ASB17Q8WXJ9 295 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 RPL3LQ92901 407 aaKnown RBP11.89□□□□□ -0.51
HOXC9-202ENST00000504557 SEH1LQ96EE3 360 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 RNF170Q96K19 258 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 RBM4BQ9BQ04 359 aaKnown RBP11.89□□□□□ -0.51
HOXC9-202ENST00000504557 RTL8AQ9BWD3 113 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 OSBPL10Q9BXB5 764 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 GPR84Q9NQS5 396 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 FAM206AQ9NX38 181 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 CTSZQ9UBR2 303 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 ORC6Q9Y5N6 252 aa11.89□□□□□ -0.51
HOXC9-202ENST00000504557 TRAV38-1A0A0B4J264 116 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 IGHV2-70DA0A0C4DH43 119 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 LOC110117498-PIK3R3F6TDL0 507 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 H3BNX3 289 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 IL5RAQ01344 420 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 KCNJ8Q15842 424 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 WDR25Q64LD2 544 aaPredicted RBP11.88□□□□□ -0.51
HOXC9-202ENST00000504557 THAP5Q7Z6K1 395 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 FAM90A1Q86YD7 464 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.88□□□□□ -0.51
HOXC9-202ENST00000504557 YIPF7Q8N8F6 280 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 PLPP7Q8NBV4 271 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 OR10H4Q8NGA5 316 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 OR5T2Q8NGG2 359 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 RAB40AQ8WXH6 277 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 HIST1H2AAQ96QV6 131 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 NUDT16L1Q9BRJ7 211 aaKnown RBP11.88□□□□□ -0.51
HOXC9-202ENST00000504557 GABARAPL3Q9BY60 117 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 IMPAD1Q9NX62 359 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 ERVK-18Q9QC07 812 aa11.88□□□□□ -0.51
HOXC9-202ENST00000504557 PPIAL4CA0A0B4J2A2 164 aa11.87□□□□□ -0.51
HOXC9-202ENST00000504557 A0A1B0GW55 424 aa11.87□□□□□ -0.51
HOXC9-202ENST00000504557 TMPRSS2O15393 492 aa11.87□□□□□ -0.51
HOXC9-202ENST00000504557 ZNF254O75437 659 aa11.87□□□□□ -0.51
HOXC9-202ENST00000504557 PTBP3O95758 552 aaKnown RBP11.87□□□□□ -0.51
HOXC9-202ENST00000504557 TFF1P04155 84 aa11.87□□□□□ -0.51
HOXC9-202ENST00000504557 DUX4L2P0CJ85 424 aa11.87□□□□□ -0.51
HOXC9-202ENST00000504557 DUX4L3P0CJ86 424 aa11.87□□□□□ -0.51
HOXC9-202ENST00000504557 DUX4L4P0CJ87 422 aa11.87□□□□□ -0.51
HOXC9-202ENST00000504557 DUX4L5P0CJ88 424 aa11.87□□□□□ -0.51
HOXC9-202ENST00000504557 DUX4L6P0CJ89 424 aa11.87□□□□□ -0.51
HOXC9-202ENST00000504557 DUX4L7P0CJ90 424 aa11.87□□□□□ -0.51
HOXC9-202ENST00000504557 FAHP16930 419 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms