RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ATP6V1B1P15313 513 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 ZNF20P17024 532 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 TNFSF4P23510 183 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 SOX2P48431 317 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 ATP5J2P56134 94 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 TNFAIP6P98066 277 aaPredicted RBP10.12□□□□□ -0.79
CUX1-210ENST00000497815 PRDX4Q13162 271 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 NEDD8Q15843 81 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 SPRNQ5BIV9 151 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 LIPKQ5VXJ0 399 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 ZNF367Q7RTV3 350 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 TSPAN14Q8NG11 270 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 OR13C5Q8NGS8 318 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 OR8S1Q8NH09 359 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 RPS4Y2Q8TD47 263 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 NINJ1Q92982 152 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 FGGYQ96C11 551 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 OPALINQ96PE5 141 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 NR1H4Q96RI1 486 aaPredicted RBP10.12□□□□□ -0.79
CUX1-210ENST00000497815 MGLLQ99685 303 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 ZNF696Q9H7X3 374 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 DECR2Q9NUI1 292 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 BEX4Q9NWD9 120 aaPredicted RBP10.12□□□□□ -0.79
CUX1-210ENST00000497815 DHDHQ9UQ10 334 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 ZNF281Q9Y2X9 895 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 ABCA4P78363 2273 aa10.12□□□□□ -0.79
CUX1-210ENST00000497815 RTTNQ86VV8 2226 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 UNC79Q9P2D8 2635 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 CENPEQ02224 2701 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 PLPP2O43688 288 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 SSX4O60224 188 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 CDC14BO60729 498 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 NCR1O76036 304 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 CST4P01036 141 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 HPXP02790 462 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 ZNF12P17014 697 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 PCMT1P22061 227 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 PSMB9P28065 219 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 BDH1Q02338 343 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 ACSM1Q08AH1 577 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 MLLT11Q13015 90 aaPredicted RBP10.11□□□□□ -0.79
CUX1-210ENST00000497815 HNRNPA0Q13151 305 aaKnown RBP10.11□□□□□ -0.79
CUX1-210ENST00000497815 CARTPTQ16568 116 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 PCGF3Q3KNV8 242 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 CEP78Q5JTW2 689 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 PLCXD3Q63HM9 321 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 KCTD8Q6ZWB6 473 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 MOB3CQ70IA8 216 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 ZDHHC23Q8IYP9 409 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 GPR148Q8TDV2 347 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 UFD1Q92890 307 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 ADAT3Q96EY9 351 aaPredicted RBP10.11□□□□□ -0.79
CUX1-210ENST00000497815 PGLYRP3Q96LB9 341 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 OR2V2Q96R30 315 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 DIRC2Q96SL1 478 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 TMED9Q9BVK6 235 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 SLC22A4Q9H015 551 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 ASH1LQ9NR48 2969 aaKnown RBP10.11□□□□□ -0.79
CUX1-210ENST00000497815 GPR173Q9NS66 373 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 ZNF701Q9NV72 531 aaPredicted RBP10.11□□□□□ -0.79
CUX1-210ENST00000497815 TREM2Q9NZC2 230 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 ITGB1BP2Q9UKP3 347 aa10.11□□□□□ -0.79
CUX1-210ENST00000497815 A0A087WXM4 84 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.1□□□□□ -0.79
CUX1-210ENST00000497815 ANXA2P2A6NMY6 339 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 CYSRT1A8MQ03 144 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 LYNX1G3V0Z9 82 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 GMDSO60547 372 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 INMTO95050 263 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 F12P00748 615 aaPredicted RBP10.1□□□□□ -0.79
CUX1-210ENST00000497815 NRASP01111 189 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 GRPP07492 148 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 RPSAP08865 295 aaKnown RBP10.1□□□□□ -0.79
CUX1-210ENST00000497815 OCM2P0CE71 109 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 LYNX1P0DP58 116 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 RBMXP38159 391 aaKnown RBP10.1□□□□□ -0.79
CUX1-210ENST00000497815 EFNA4P52798 201 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 ARMCX4Q5H9R4 360 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 CLVS2Q5SYC1 327 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 ZBTB37Q5TC79 503 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 UBE2UQ5VVX9 321 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 Q6ZSR3 168 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 CCDC54Q8NEL0 328 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 NPRL2Q8WTW4 380 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 ITLN1Q8WWA0 313 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 NEU4Q8WWR8 484 aaPredicted RBP10.1□□□□□ -0.79
CUX1-210ENST00000497815 TMEM203Q969S6 136 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 MBD6Q96DN6 1003 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 HIST1H2AAQ96QV6 131 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 GSX2Q9BZM3 304 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 EGLN1Q9GZT9 426 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 SAP30LQ9HAJ7 183 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 ISYNA1Q9NPH2 558 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 ZNF275Q9NSD4 429 aaPredicted RBP10.1□□□□□ -0.79
CUX1-210ENST00000497815 NOP16Q9Y3C1 178 aaKnown RBP10.1□□□□□ -0.79
CUX1-210ENST00000497815 MPC1Q9Y5U8 109 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 ROS1P08922 2347 aa10.1□□□□□ -0.79
CUX1-210ENST00000497815 A0A1B0GWJ7 208 aa10.09□□□□□ -0.79
CUX1-210ENST00000497815 A0A1W2PPK0 400 aa10.09□□□□□ -0.79
CUX1-210ENST00000497815 ANKRD61A6NGH8 418 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms